RegulonDB RegulonDB 11.1: Operon Form

allDCE operon and associated TUs in Escherichia coli K-12 genome

Name: allDCE
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: allDC-ylbA
Gene(s): allE, allC, allD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IEP-COREGULATION] Inferred through co-regulation
Reference(s): [1] Cusa E., et al., 1999
Name: allDp
+1: 546411
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 48
Sequence: aataaattctaactatatttttttgcctgtctggatcacataatccagatattttccctgTatgttaattgcagtcatgct
                            -35                        -10  +1                   
Evidence: [COMP-AINF]
Reference(s): [2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote AllS-allantoin activator allDp 546498 546513 -94.0 tttaataagcGTTGTTGTTTTAAAAAtcaggttaaa nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] nd [3]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -7.7 546417 546442 tttttgcctgTCTGGATCACATAATCCAGATATTTtccctgtatg
  anti-terminator -5.0 546439 546481 taaaagtgagCGGATTATCAAATAAATTCTAACTATATTTTTTTGCCTGTCTggatcacata
  anti-anti-terminator -5.5 546467 546529 ctattactcaTTATTTTTTAATAAGCGTTGTTGTTTTAAAAATCAGGTTAAAAGTGAGCGGATTATCAAATAaattctaact
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"