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Name: | feoABC | |||||||||
Gene(s): | feoA, feoB, feoC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The feoAB genes are upregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for feoB and for feoC. This structure could regulate the expression of the genes, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
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Evidence: | [PM] Polar mutation | |||||||||
Reference(s): |
[1] Hantke K. 2003 [2] Kammler M., et al., 1993 |
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Promoter | ||||||||||
Name: | feoAp | |||||||||
+1: | 3540057 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 106 | |||||||||
Sequence: |
accaacattcgcacacattttaagtattgctgatagaaaccattctcattatcattgtgtTgttgattatttaatctctcc -35 -10 +1 |
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Evidence: |
[AIPP] [ICWHO] [IHBCE] |
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Reference(s): |
[3] Cartron ML., et al., 2006 [4] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FNR | activator | feoAp | 3539956 | 3539978 | -90.5 | gctgcgatatAACCTTGAGCCACATCAACATTGagtcagatta | nd | [GEA], [APIORCISFBSCS] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Fur-Fe2+ | repressor | feoAp | 3540031 | 3540049 | -17.0 | tattgctgatAGAAACCATTCTCATTATCattgtgttgt | nd | [GEA], [APIORCISFBSCS] | [2], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | OmpR-phosphorylated | activator | feoAp | 3539869 | 3539888 | -178.0 | ccggcaatatTTATCATTTCATTAACAACTgaaaccttaa | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [5] |
Reference(s) |
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