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|
| Operon |  |
|---|---|
| Name: | lptD-surA-pdxA-rsmA-apaGH |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | apaGH |
| Gene(s): | apaH, apaG Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Blanchin-Roland S., et al., 1986 |
| Promoter | |
| Name: | apaGp |
| +1: | 52034 |
| Distance from start of the gene: | 428 |
| Sequence: |
aacctgccttataacatctccacgccgttgatgttccatctgtttagctatactgatgccAttgccgacatgcactttatg |
| Evidence: |
[HIPP] [IMP] [RS-EPT-CBR] |
| Reference(s): |
[1] Blanchin-Roland S., et al., 1986 [2] Salgado H, et al., 2012 |
| Name: | rsmA-apaGH |
| Synonym(s): | ksgA-apaGH, rsmA-apaG-apaH |
| Gene(s): | apaH, apaG, rsmA Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [3] Roa BB., et al., 1989 |
| Promoter | |
| Name: | rsmAp |
| +1: | 52588 |
| Distance from start of the gene: | 158 |
| Sequence: |
aacgccgacgccgtgctggcgatgtaccacgatcagggtcttcccgtgctaaaataccagGgcttcgggcgcggtgtgaac |
| Evidence: | [TIM] |
| Reference(s): | [3] Roa BB., et al., 1989 |
| Name: | imp |
| Gene(s): | lptD Genome Browser M3D Gene expression COLOMBOS |
| Promoter | |
| Name: | impp1 |
| +1: | 57156 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 47 |
| Sequence: |
gacgctattcggacaggattaacactagcgtagagatgacgagtacgttagtctctgaccGtttgtcacgcgcaacgttac -35 -10 +1 |
| Evidence: |
[HIPP] [ICWHO] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[4] Huerta AM., et al., 2003 [5] Ohtsu I., et al., 2004 [2] Salgado H, et al., 2012 |
| Name: | imp |
| Gene(s): | lptD Genome Browser M3D Gene expression COLOMBOS |
| Promoter | |
| Name: | impp2 |
| +1: | 57241 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 132 |
| Sequence: |
cgttttccggctgcggtcaattgtgggacatcgcctataatttgcattatcatacctgtcAttcaatgccgtgcctaacac -35 -10 +1 |
| Evidence: |
[HIPP] [ICWHO] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[4] Huerta AM., et al., 2003 [5] Ohtsu I., et al., 2004 [2] Salgado H, et al., 2012 |
| Name: | imp-surA-pdxA |
| Gene(s): | pdxA, surA, lptD Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [6] Dartigalongue C., et al., 2001 |
| Promoter | |
| Name: | impp3 |
| +1: | 57336 |
| Sigma Factor: | Sigma24 Sigmulon |
| Distance from start of the gene: | 227 |
| Sequence: |
ggccacgccaatgatttttccccaatactgcatatattccccaaatcgacacacggatatCagggctatctcccacaatat -35 -10 +1 |
| Note(s): | This promoter was identified by Dartigalongue et al. Dartigalongue C,2001, but Ohtsu et al. Ohtsu I,2004 could not detect it, noting that the contribution of this promoter to imp gene expression was very small, if any. |
| Evidence: |
[APIORCISFBSCS] [HIPP] [ICWHO] [TIM] |
| Reference(s): |
[6] Dartigalongue C., et al., 2001 [4] Huerta AM., et al., 2003 |
| Name: | pdxA-rsmA-apaGH |
| Synonym(s): | pdxA-ksgA-apaG-apaH |
| Gene(s): | apaH, apaG, rsmA, pdxA Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [7] Pease AJ., et al., 2002 |
| Promoter | |
| Name: | pdxAp |
| +1: | Unknown |
| Evidence: |
[NTAS] [TASES] |
| Reference(s): |
[7] Pease AJ., et al., 2002 [3] Roa BB., et al., 1989 |
| Name: | surA-pdxA-rsmA-apaGH |
| Synonym(s): | surA-pdxA-ksgA-apaGH |
| Gene(s): | apaH, apaG, rsmA, pdxA, surA Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [PM] Polar mutation |
| Reference(s): |
[3] Roa BB., et al., 1989 [8] Tormo A., et al., 1990 |
| Promoter | |
| Name: | surAp |
| +1: | Unknown |
| Sigma Factor: | Sigma24 Sigmulon |
| Evidence: |
[NTAS] [TASES] |
| Reference(s): |
[7] Pease AJ., et al., 2002 [3] Roa BB., et al., 1989 [8] Tormo A., et al., 1990 |
| Name: | pdxA-rsmA |
| Synonym(s): | pdxA-ksgA |
| Gene(s): | rsmA, pdxA Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [7] Pease AJ., et al., 2002 |
| Promoter | |
| Name: | pdxAp |
| +1: | Unknown |
| Evidence: |
[NTAS] [TASES] |
| Reference(s): |
[7] Pease AJ., et al., 2002 [3] Roa BB., et al., 1989 |
| Reference(s) |
|
|---|---|
[HIPP] Human inference of promoter position