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| Operon |  |
|---|---|
| Name: | glgBXCAP |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | glgAP |
| Gene(s): | glgP, glgA Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [ITCR] Inferred through co-regulation |
| Reference(s): | [1] Montero M., et al., 2011 |
| Promoter | |
| Name: | glgAp |
| +1: | 3568392 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 359 |
| Sequence: |
gtggtgccggaactggatatgtacgatcgcaattggccaattcgcacctacaatgaatcaTtaccgccagcgaaattcgtg -35 -10 +1 |
| Evidence: |
[HIPP] [ICWHO] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Montero M., et al., 2011 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc |
| Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
| Name: | glgCAP |
| Synonym(s): | OP00164, glgC, glgCAY |
| Gene(s): | glgP, glgA, glgC Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | In RegulonDB, the old name of this operon was glgBXCAP. With updated information, now there are two operons described, glgBX and glgCAP. The glgCAP operon is positively regulated by the ppGpp stringent response regulator Romeo T,1989. 352487. Traxler MF,2008 This operon is also under positive control of the PhoP-PhoQ regulatory system in the submillimolar Mg2+ concentration range 19702577 Based on gene expression analysis, it was shown that the glgCAP operon belongs to the RelA regulon 19702577 |
| Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
| Reference(s): |
[5] Romeo T., et al., 1988 [6] Romeo T., et al., 1989 [7] Yang H., et al., 1996 |
| Promoter | |
| Name: | glgCp1 |
| +1: | 3569389 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 61 |
| Sequence: |
ctggggagtggcacgccattcccccattcgctggagaggataacccagtgattacggctgTctggcagggacctgcacacg -35 -10 +1 |
| Evidence: |
[ICWHO] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [6] Romeo T., et al., 1989 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc |
| Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
| Evidence: | [IMP] Inferred from mutant phenotype |
| Reference(s): | [6] Romeo T., et al., 1989 |
| Name: | glgCAP |
| Synonym(s): | glgC, glgCAY |
| Gene(s): | glgP, glgA, glgC Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | In RegulonDB, the old name of this operon was glgBXCAP. With updated information, now there are two operons described, glgBX and glgCAP. The glgCAP operon is positively regulated by the ppGpp stringent response regulator Romeo T,1989. 352487. Traxler MF,2008 This operon is also under positive control of the PhoP-PhoQ regulatory system in the submillimolar Mg2+ concentration range 19702577 Based on gene expression analysis, it was shown that the glgCAP operon belongs to the RelA regulon 19702577 |
| Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
| Reference(s): |
[5] Romeo T., et al., 1988 [6] Romeo T., et al., 1989 [7] Yang H., et al., 1996 |
| Promoter | |
| Name: | glgCp2 |
| +1: | 3569455 |
| Distance from start of the gene: | 127 |
| Sequence: |
tgctctcggatcgctttttgatcgcaattaacgccacgcttgaggtaacagagattgtttTacctgctggggagtggcacg |
| Evidence: |
[HIPP] [TIM] |
| Reference(s): | [6] Romeo T., et al., 1989 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc |
| Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
| Evidence: | [IMP] Inferred from mutant phenotype |
| Reference(s): | [6] Romeo T., et al., 1989 |
| Name: | glgCAP |
| Synonym(s): | glgC, glgCAY |
| Gene(s): | glgP, glgA, glgC Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | In RegulonDB, the old name of this operon was glgBXCAP. With updated information, now there are two operons described, glgBX and glgCAP. The glgCAP operon is positively regulated by the ppGpp stringent response regulator Romeo T,1989. 352487. Traxler MF,2008 This operon is also under positive control of the PhoP-PhoQ regulatory system in the submillimolar Mg2+ concentration range 19702577 Based on gene expression analysis, it was shown that the glgCAP operon belongs to the RelA regulon 19702577 |
| Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
| Reference(s): |
[5] Romeo T., et al., 1988 [6] Romeo T., et al., 1989 [7] Yang H., et al., 1996 |
| Promoter | |
| Name: | glgCp3 |
| +1: | 3569571 |
| Sigma Factor: | Sigma38 Sigmulon |
| Distance from start of the gene: | 243 |
| Sequence: |
tttggtggagaatcgctggtgggaagaaggcgacggcaatgtccgttggctaaatcgataTgctcaacctttaagcacgga -35 -10 +1 |
| Evidence: |
[ICWHO] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [6] Romeo T., et al., 1989 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc |
| Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
| Name: | glgBXCAP | |||||||||
| Gene(s): | glgP, glgA, glgC, glgX, glgB Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Note(s): | The transcription of this transcription unit is induced during the exponential growth phase, reaching a plateau in the stationary phase Montero M,2011 Montero et al. Montero M,2011did not find experimentally the transcription start sites upstream of glgC that had been reported by T. Romeo and J. Preiss in 1989 Romeo T,1989 Montero et al. suggested that only the promoters glgBp and glgAp transcribe the genes of this operon and that glgBp is the main promoter directing the expression of the operon Montero M,2011 |
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| Evidence: | [ITCR] Inferred through co-regulation [LTED] Length of transcript experimentally determined |
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| Reference(s): | [1] Montero M., et al., 2011 | |||||||||
| Promoter | ||||||||||
| Name: | glgBp | |||||||||
| +1: | 3573657 | |||||||||
| Sigma Factor: | Sigma70 Sigmulon | |||||||||
| Distance from start of the gene: | 155 | |||||||||
| Sequence: |
taagcgcagatgtttcatgatttaccgggagttaaatagagcattggctattctttaaggGtggctgaatacatgagtatt -35 -10 +1 |
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| Evidence: |
[HIPP] [ICWHO] [TIM] |
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| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Montero M., et al., 2011 |
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| Terminator(s) | ||||||||||
| Type: | rho-independent | |||||||||
| Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc | |||||||||
| Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
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| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| proximal | PhoP-Phosphorylated1 | activator | glgBp | 3573683 | 3573699 | -34.0 | agatgtttcaTGATTTACCGGGAGTTAAatagagcatt | nd | [AIBSCS], [GEA] | [1] |
| Note(s): | 1It was demonstrated that PhoP is able to activate the expression of each gene in the operon Montero M,20111It was demonstrated that PhoP is able to activate the expression of each gene in the operon Montero M,2011 |
| Reference(s) |
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|---|---|
[HIPP] Human inference of promoter position