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Name: | glgAP | ||||||||||
Gene(s): | glgP, glgA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation | ||||||||||
Reference(s): | [1] Montero M., et al., 2011 | ||||||||||
Promoter | |||||||||||
Name: | glgAp | ||||||||||
+1: | 3568392 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 359 | ||||||||||
Sequence: |
gtggtgccggaactggatatgtacgatcgcaattggccaattcgcacctacaatgaatcaTtaccgccagcgaaattcgtg -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Montero M., et al., 2011 |
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Terminator(s) | |||||||||||
Type: | rho-independent | ||||||||||
Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc | ||||||||||
Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | PhoP-phosphorylated | activator | glgAp | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] |
Name: | glgCAP | ||||||||||
Synonym(s): | OP00164, glgC, glgCAY | ||||||||||
Gene(s): | glgP, glgA, glgC Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | In RegulonDB, the old name of this operon was glgBXCAP. With updated information, now there are two operons described, glgBX and glgCAP. The glgCAP operon is positively regulated by the ppGpp stringent response regulator Romeo T,1989. Bridger WA, Paranchych W,1978. Traxler MF,2008 This operon is also under positive control of the PhoP-PhoQ regulatory system in the submillimolar Mg2+ concentration range Montero M, Eydallin G, Viale AM, Almagro G, Muñoz FJ, Rahimpour M, Sesma MT, Baroja-Fernández E, Pozueta-Romero J,2009 Based on gene expression analysis, it was shown that the glgCAP operon belongs to the RelA regulon Montero M, Eydallin G, Viale AM, Almagro G, Muñoz FJ, Rahimpour M, Sesma MT, Baroja-Fernández E, Pozueta-Romero J,2009 |
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Evidence: | [IC-ADJ-GENES-SAME-BIO-PROCESS] Products of adjacent genes in the same biological process | ||||||||||
Reference(s): |
[5] Romeo T., et al., 1988 [6] Romeo T., et al., 1989 [7] Yang H., et al., 1996 |
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Promoter | |||||||||||
Name: | glgCp1 | ||||||||||
+1: | 3569389 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 61 | ||||||||||
Sequence: |
ctggggagtggcacgccattcccccattcgctggagaggataacccagtgattacggctgTctggcagggacctgcacacg -35 -10 +1 |
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Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [6] Romeo T., et al., 1989 |
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Terminator(s) | |||||||||||
Type: | rho-independent | ||||||||||
Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc | ||||||||||
Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | CRP-cyclic-AMP | activator | glgCp1 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [6] |
Evidence: | [EXP-IMP] Inferred from mutant phenotype |
Reference(s): | [6] Romeo T., et al., 1989 |
Name: | glgCAP |
Synonym(s): | glgC, glgCAY |
Gene(s): | glgP, glgA, glgC Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In RegulonDB, the old name of this operon was glgBXCAP. With updated information, now there are two operons described, glgBX and glgCAP. The glgCAP operon is positively regulated by the ppGpp stringent response regulator Romeo T,1989. Bridger WA, Paranchych W,1978. Traxler MF,2008 This operon is also under positive control of the PhoP-PhoQ regulatory system in the submillimolar Mg2+ concentration range Montero M, Eydallin G, Viale AM, Almagro G, Muñoz FJ, Rahimpour M, Sesma MT, Baroja-Fernández E, Pozueta-Romero J,2009 Based on gene expression analysis, it was shown that the glgCAP operon belongs to the RelA regulon Montero M, Eydallin G, Viale AM, Almagro G, Muñoz FJ, Rahimpour M, Sesma MT, Baroja-Fernández E, Pozueta-Romero J,2009 |
Evidence: | [IC-ADJ-GENES-SAME-BIO-PROCESS] Products of adjacent genes in the same biological process |
Reference(s): |
[5] Romeo T., et al., 1988 [6] Romeo T., et al., 1989 [7] Yang H., et al., 1996 |
Promoter | |
Name: | glgCp2 |
+1: | 3569455 |
Distance from start of the gene: | 127 |
Sequence: |
tgctctcggatcgctttttgatcgcaattaacgccacgcttgaggtaacagagattgtttTacctgctggggagtggcacg |
Evidence: |
[COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): | [6] Romeo T., et al., 1989 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc |
Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
Evidence: | [EXP-IMP] Inferred from mutant phenotype |
Reference(s): | [6] Romeo T., et al., 1989 |
Name: | glgCAP |
Synonym(s): | glgC, glgCAY |
Gene(s): | glgP, glgA, glgC Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In RegulonDB, the old name of this operon was glgBXCAP. With updated information, now there are two operons described, glgBX and glgCAP. The glgCAP operon is positively regulated by the ppGpp stringent response regulator Romeo T,1989. Bridger WA, Paranchych W,1978. Traxler MF,2008 This operon is also under positive control of the PhoP-PhoQ regulatory system in the submillimolar Mg2+ concentration range Montero M, Eydallin G, Viale AM, Almagro G, Muñoz FJ, Rahimpour M, Sesma MT, Baroja-Fernández E, Pozueta-Romero J,2009 Based on gene expression analysis, it was shown that the glgCAP operon belongs to the RelA regulon Montero M, Eydallin G, Viale AM, Almagro G, Muñoz FJ, Rahimpour M, Sesma MT, Baroja-Fernández E, Pozueta-Romero J,2009 |
Evidence: | [IC-ADJ-GENES-SAME-BIO-PROCESS] Products of adjacent genes in the same biological process |
Reference(s): |
[5] Romeo T., et al., 1988 [6] Romeo T., et al., 1989 [7] Yang H., et al., 1996 |
Promoter | |
Name: | glgCp3 |
+1: | 3569571 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 243 |
Sequence: |
tttggtggagaatcgctggtgggaagaaggcgacggcaatgtccgttggctaaatcgataTgctcaacctttaagcacgga -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): |
[2] Huerta AM., et al., 2003 [8] Maciag A., et al., 2011 [6] Romeo T., et al., 1989 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc |
Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
Name: | glgBXCAP | ||||||||||
Gene(s): | glgP, glgA, glgC, glgX, glgB Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The transcription of this transcription unit is induced during the exponential growth phase, reaching a plateau in the stationary phase Montero M,2011 Montero et al. Montero M,2011did not find experimentally the transcription start sites upstream of glgC that had been reported by T. Romeo and J. Preiss in 1989 Romeo T,1989 Montero et al. suggested that only the promoters glgBp and glgAp transcribe the genes of this operon and that glgBp is the main promoter directing the expression of the operon Montero M,2011 |
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Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined [EXP-IEP-COREGULATION] Inferred through co-regulation |
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Reference(s): | [1] Montero M., et al., 2011 | ||||||||||
Promoter | |||||||||||
Name: | glgBp | ||||||||||
+1: | 3573657 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 155 | ||||||||||
Sequence: |
taagcgcagatgtttcatgatttaccgggagttaaatagagcattggctattctttaaggGtggctgaatacatgagtatt -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Montero M., et al., 2011 |
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Terminator(s) | |||||||||||
Type: | rho-independent | ||||||||||
Sequence: | ttttccgaaaTGATGGCGGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTGGTGAACTTAcaatctcacc | ||||||||||
Reference(s): |
[3] Feng CQ., et al., 2019 [4] Lesnik EA., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | PhoP-phosphorylated | activator | glgBp | 3573683 | 3573699 | -34.0 | gatgtttcatGATTTACCGGGAGTTAAatagagcatt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] |
Reference(s) |
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