RegulonDB RegulonDB 10.10: Operon Form

alaC operon and associated TUs in Escherichia coli K-12 genome

Name: alaC
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: alaC
Gene(s): alaC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: alaCp
+1: 2498399
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 104
Sequence: agataaatttcctgtttttaaagcagagttcctcatttaacgtcattaataaaatgttctAaaacgctggacagacagaaa
                             -35                  -10       +1                   
Evidence: [AIPP]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote SgrR activator alaCp 2498550 2498583 -167.5 aaaccacaatTTTAAAAGGGGATTGATAGATAAATGGTGTATTAgcaatgcatc nd [GEA], [APIORCISFBSCS], [SM] [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -15.1 2498310 2498341 ccatcgtggcAGCGTCGCTCGGACGGTCCGGGCGCTAACGTtaatctgagg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"