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Name: | rcnAB | ||||||||||
Gene(s): | rcnA, rcnB Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | In response to increasing concentrations of nickel or cobalt, RcnR releases the repression of rcnA and rcnR to allow its expression Iwig JS,2006. Iwig JS,2009 It has been recently determined that the expression levels of the rcnA and rcnR genes are directly induced by Ni and Co via the metallo-regulator RcnR, and both genes are differentially expressed Blaha D,2011 | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
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Reference(s): | [1] Bleriot C., et al., 2011 | ||||||||||
Promoter | |||||||||||
Name: | rcnAp | ||||||||||
+1: | 2185827 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 90 | ||||||||||
Sequence: |
tttctgtttatcacggattgtatgagacatggcaacacctggttaacaagaatatgaaaaAtcatagcactattaatctac -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Blaha D., et al., 2011 [3] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | Fur-Fe2+ | repressor | rcnAp | 2185894 | 2185915 | 78.0 | cagattgccgAATTAATACTAAGAATTATTATcatgaccgaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [6] |
remote | Fur-Fe2+ | repressor | rcnAp | 2185897 | 2185918 | 81.0 | attgccgaatTAATACTAAGAATTATTATCATgaccgaattt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [6] |
remote | Fur-Fe2+ | repressor | rcnAp | 2185903 | 2185924 | 87.0 | gaattaatacTAAGAATTATTATCATGACCGAatttacaact | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | RcnR | repressor | rcnAp | 2185845 | 2185859 | 26.5 | actattaatcTACTGGGGGGTAGTAtcaggtactg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [4], [5], [6] |
remote | RcnR | repressor | rcnAp | 2185865 | 2185879 | 46.5 | tagtatcaggTACTGGGGGGGAGTAgaatcagatt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [4], [5], [6] |
Name: | rcnB |
Gene(s): | rcnB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF] Inferred computationally without human oversight [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): | [1] Bleriot C., et al., 2011 |
Reference(s) |
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