RegulonDB RegulonDB 11.1: Operon Form

shoB operon and associated TUs in Escherichia coli K-12 genome

Name: shoB
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: shoB
Synonym(s): ryfB
Gene(s): shoB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Name: shoBp
+1: 2700291
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 94
Sequence: acaccatgccacagaattcccccattgaaacgagtggtgtcgtcaaagctctggtgtggaGtgcagcatgcaccctcaata
Evidence: [AS]
Reference(s): [1] Kawano M., et al., 2005
sRNA Interaction TU
sRNA TU Regulated Function Binding Sites Regulatory Mechanism Evidence (Confirmed, Strong, Weak) Reference(s)
PosLeft PosRight Target sequence (mRNA)
small regulatory RNA OhsC shoB repressor 2700273 2700291 UUGAGGGUGCAUGCUGCAC nd [EXP-IMP] [2]