RegulonDB RegulonDB 10.8: Operon Form
   

shoB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: shoB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: shoB
Synonym(s): ryfB
Gene(s): shoB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Promoter
Name: shoBp
+1: 2700291
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 94
Sequence: acaccatgccacagaattcccccattgaaacgagtggtgtcgtcaaagctctggtgtggaGtgcagcatgcaccctcaata
Evidence: [TIM]
Reference(s): [1] Kawano M., et al., 2005


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  ohsC antisense post-transcriptional regulation repressor 2700273 2700291 GTGCAGCATGCACCCTCA [GEA]
[HIFS]
[IMP]		 [1]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"


Evidence    

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

RegulonDB