RegulonDB RegulonDB 10.8: Operon Form

shoB operon and associated TUs in Escherichia coli K-12 genome

Name: shoB
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: shoB
Synonym(s): ryfB
Gene(s): shoB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Name: shoBp
+1: 2700291
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 94
Sequence: acaccatgccacagaattcccccattgaaacgagtggtgtcgtcaaagctctggtgtggaGtgcagcatgcaccctcaata
Evidence: [TIM]
Reference(s): [1] Kawano M., et al., 2005

Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  ohsC antisense post-transcriptional regulation repressor 2700273 2700291 GTGCAGCATGCACCCTCA [GEA]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"