RegulonDB RegulonDB 11.1: Operon Form
   

shoB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: shoB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: shoB
Synonym(s): ryfB
Gene(s): shoB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Promoter
Name: shoBp
+1: 2700291
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 94
Sequence: acaccatgccacagaattcccccattgaaacgagtggtgtcgtcaaagctctggtgtggaGtgcagcatgcaccctcaata
Evidence: [AS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Kawano M., et al., 2005
sRNA Interaction TU
sRNA TU Regulated Function Binding Sites Regulatory Mechanism Evidence (Confirmed, Strong, Weak) Reference(s)
PosLeft PosRight Target sequence (mRNA)
small regulatory RNA OhsC shoB repressor 2700273 2700291 UUGAGGGUGCAUGCUGCAC nd [EXP-IMP] [2]


Evidence    

 [AS] Author statement

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IMP] Inferred from mutant phenotype


Reference(s)    

 [1] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [2] Fozo EM., Kawano M., Fontaine F., Kaya Y., Mendieta KS., Jones KL., Ocampo A., Rudd KE., Storz G., 2008, Repression of small toxic protein synthesis by the Sib and OhsC small RNAs., Mol Microbiol 70(5):1076-93

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