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Name: | ibaG-murA |
Gene(s): | murA, ibaG Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): | [1] Guinote IB., et al., 2012 |
Promoter | |
Name: | ibaGp1 |
+1: | 3336833 |
Distance from start of the gene: | 30 |
Sequence: |
atttatcagcgaggctttttgcttatttatgccagcgcaactttgctctaagatgtttcgCtggtttattaactgatgatt |
Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): | [1] Guinote IB., et al., 2012 |
Name: | ibaG | ||||||||||
Gene(s): | ibaG Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | ibaGp2 | ||||||||||
+1: | 3336886 | ||||||||||
Sigma Factor: | Sigma24 Sigmulon | ||||||||||
Distance from start of the gene: | 83 | ||||||||||
Sequence: |
tatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgagccttgtctgatttatcAgcgaggctttttgcttattt -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): |
[2] Gama-Castro S., et al., 2008 [3] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | MlrA | activator | ibaGp2 | 3336987 | 3337021 | -117.5 | ggggtaaacgACAAAGTGTATACCCTGGCGAAATTGTATAATTTGcctgctgatg | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [4] |
Name: | murA |
Gene(s): | murA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF] Inferred computationally without human oversight |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -8.4 | 3336513 | 3336541 | tgagctatggGCGATTCGCCGGTAGCGGATATGAATTGttaactgaga |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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