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Name: | ycjY | ||||||||||
Gene(s): | ycjY Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | ycjYp6 | ||||||||||
+1: | 1392072 | ||||||||||
Sigma Factor: | Sigma32 Sigmulon | ||||||||||
Distance from start of the gene: | 219 | ||||||||||
Sequence: |
atcccaatcgttcttctatacgacgcactatctggcttaaagctgactgcgccatgctcaGgcgggctgctgcacgagtga |
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Evidence: | [COMP-AINF] | ||||||||||
Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | PgrR | repressor | ycjYp6 | 1391953 | 1391967 | 113.5 | gcaatctattAATCATTTAAATGATaggtctaatc | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IGI], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [3] |
Name: | ycjY-ymjDC-mpaA | ||||||||||
Gene(s): | mpaA, ymjC, ymjD, ycjY Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The ycjY-ymjD-ymjC-mpaA operon is derepressed under nutrient starvation for self-generation of amino acids, but it is repressed under high osmotic conditions for maintenance of the rigidity of the peptidoglycan (PG) sacculus, which provides mechanical strength to resist osmotic challenges Shimada T,2013 | ||||||||||
Evidence: | [IC-ADJ-GENES-SAME-BIO-PROCESS] Products of adjacent genes in the same biological process | ||||||||||
Reference(s): | [3] Shimada T., et al., 2013 | ||||||||||
Promoter | |||||||||||
Name: | ycjYp6 | ||||||||||
+1: | 1392072 | ||||||||||
Sigma Factor: | Sigma32 Sigmulon | ||||||||||
Distance from start of the gene: | 219 | ||||||||||
Sequence: |
atcccaatcgttcttctatacgacgcactatctggcttaaagctgactgcgccatgctcaGgcgggctgctgcacgagtga |
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Evidence: | [COMP-AINF] | ||||||||||
Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | PgrR | repressor | ycjYp6 | 1391953 | 1391967 | 113.5 | gcaatctattAATCATTTAAATGATaggtctaatc | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IGI], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [3] |
Name: | mpaA |
Gene(s): | mpaA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined [IC] Inferred by curator |
Reference(s): | [3] Shimada T., et al., 2013 |
Name: | ymjC-mpaA |
Gene(s): | mpaA, ymjC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF] Inferred computationally without human oversight |
Reference(s) |
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