RegulonDB RegulonDB 10.8: Operon Form
   

waaH operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: waaH
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yibD
Gene(s): waaH   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: yibDp1
+1: 3790149
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 68
Sequence: ctgctctcattatctctctaccctgaagtgactctctcacctgtaaaaataatatctcacAggcttaatagtttcttaata
                            -35                   -10       +1                   
Evidence: [AIPP]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote NsrR repressor yibDp1 3790259 3790270 -115.0 ataatctgttAAATATGTAAAAtcctgtcagt nd [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoB-Phosphorylated activator yibDp1 3790199 3790219 -59.5 tgtgctgatcTCTTATATAGCTGCTCTCATTatctctctac nd [AIBSCS], [CV(GEA/ROMA)], [GEA] [3]
remote PhoB-Phosphorylated activator yibDp1 3790249 3790276 -113.0 ctgaggataaTCTGTTAAATATGTAAAATCCTGTCAGTgtaataaaga nd [AIBSCS], [CV(GEA/ROMA)], [GEA] [3]


Transcription unit       
Name: yibD
Gene(s): waaH   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -13.4 3790287 3790310 acacgaacaaGGGCTGGTATTCCAGCCCTTTTAtctgaggata
  anti-terminator -8.74 3790306 3790351 cgttcgggccAGTCCGGGAAAGTTATTCTGAGCTGGGATTAACACGAACAAGGGCtggtattcca
  anti-anti-terminator -8.5 3790337 3790382 cgatgatttcCAGAAGGGCTTTGACGCTATGCGTTCGGGCCAGTCCGGGAAAGTTattctgagct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





RegulonDB