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Name: | umpH |
Synonym(s): | nagD |
Gene(s): | umpH Genome Browser M3D Gene expression COLOMBOS |
Reference(s): | [1] Plumbridge JA. 1989 |
Promoter | |
Name: | umpHp |
+1: | 700352 |
Distance from start of the gene: | 26 |
Sequence: |
ctcaacggtattttgctccagcatttgctggaaaattaatgtgcttttatagtggcgcttAttgttgtcaatattctgggt |
Evidence: |
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
Reference(s): |
[1] Plumbridge JA. 1989 [2] Salgado H, et al., 2012 |
Name: | nagC |
Gene(s): | nagC Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Two promoters localized within the nagA gene sequence are responsible for most of the nagC expression. Although mutational and S1 mapping analyses have been carried out by Plumbridge J.,1996 they did not point out the transcriptional start of nagCp1 and nagCp2, and they only mentioned the putative boxes for σ70-type promoters. Therefore, a putative transcriptional start site to these promoters was assigned based on the observation that the majority of the promoters with experimentally determined transcriptional start sites present a distance of 6 nucleotides between the transcriptional start site and the -10 box Harley CB, Reynolds RP,1987 |
Promoter | |
Name: | nagCp1 |
+1: | 701865 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 271 |
Sequence: |
cgccagcaggtgccaacattgaacagttcatttttgcgggtaaaacaatatactaccgtaAcggactttgtgtggatgaga -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IMP] [RS-EPT-CBR] |
Reference(s): |
[3] Huerta AM., et al., 2003 [4] Plumbridge J. 1996 [2] Salgado H, et al., 2012 |
Name: | nagC |
Gene(s): | nagC Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Two promoters localized within the nagA gene sequence are responsible for most of the nagC expression. Although mutational and S1 mapping analyses have been carried out by Plumbridge J.,1996 they did not point out the transcriptional start of nagCp1 and nagCp2, and they only mentioned the putative boxes for σ70-type promoters. Therefore, a putative transcriptional start site to these promoters was assigned based on the observation that the majority of the promoters with experimentally determined transcriptional start sites present a distance of 6 nucleotides between the transcriptional start site and the -10 box Harley CB, Reynolds RP,1987 |
Promoter | |
Name: | nagCp2 |
+1: | 702008 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 414 |
Sequence: |
acctggcctggcgggcgcgatcctcgacgaagctgacatttattgcggtattattgctgaTggcctgcatgttgattacgc -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IMP] |
Reference(s): |
[3] Huerta AM., et al., 2003 [4] Plumbridge J. 1996 |
Name: | nagA | ||||||||||
Gene(s): | nagA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Promoter | |||||||||||
Name: | nagAp | ||||||||||
+1: | 703175 | ||||||||||
Distance from start of the gene: | 424 | ||||||||||
Sequence: |
gttcttacggaaaaattcatctgtttatgggcggtgtaggtaacgacggtcatattgcatTtaacgaaccggcgtcttctc |
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Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] | ||||||||||
Reference(s): | [5] Minagawa S., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | PhoP-phosphorylated | activator | nagAp | 703198 | 703214 | -31.0 | aaaattcatcTGTTTATGGGCGGTGTAggtaacgacg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [5] |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -15.1 | 702767 | 702800 | ttgttatcccTGCCCTGGCTCCTTGCTCAGGGCAATATTTTTTaaaatcgggg |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Evidence |
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Reference(s) |
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