RegulonDB RegulonDB 10.10: Operon Form

rclABC operon and associated TUs in Escherichia coli K-12 genome

Name: rclABC
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: rclABC
Gene(s): rclC, rclB, rclA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
[PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Parker BW., et al., 2013
Name: ykgCp1
+1: 320215
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 214
Sequence: tcgttccttgtggagcgttaagcatcaacaaacggctaagggcatccatatcagactcctGagtggtttttgattacaaac
                         -35                     -10        +1                   
Evidence: [ICWHO]
Reference(s): [2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd RclR activator ykgCp1 nd nd nd nd nd [GEA], [BPP] [1]

Transcription unit       
Name: rclBC
Gene(s): rclC, rclB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.1 320204 320230 ctaagggcatCCATATCAGACTCCTGAGTGGTTTTTgattacaaac
  anti-terminator -11.6 320226 320267 gatcgttcctTGTGGAGCGTTAAGCATCAACAAACGGCTAAGGGCATCCATatcagactcc
  anti-anti-terminator -9.5 320269 320302 agctgccagtCACTTCCTAACACGCAATTCTTATCGATCGTTCcttgtggagc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"