RegulonDB RegulonDB 10.8: Operon Form
   

nanCMS operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: nanCMS
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: nanCMS
Gene(s): nanS, nanM, nanC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
[PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Kalivoda KA., et al., 2013
Promoter
Name: nanCp
+1: 4539928
Distance from start of the gene: 427
Sequence: aattgcaaatctggttttgttgtatggattgcgtgatttttgatctggtataacaggtatAaaggtgcaccaagatagtca
Evidence: [TIM]
Reference(s): [2] Condemine G., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator nanCp 4539979 4540000 -61.5 gatcgacataTTTTGTGACACGAATTGCAAATctggttttgt nd [AIBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NagC repressor nanCp 4539982 4540004 -65.0 aaaagatcgaCATATTTTGTGACACGAATTGCAaatctggttt nd [AIBSCS], [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [SM] [2], [4], [5]
remote NagC repressor nanCp 4540194 4540216 -277.0 aaccaggaaaCATATTTCATGATGAGAATTATGctcagcctga nd [AIBSCS], [APIORCISFBSCS], [BPP], [CV(CHIP-SV/SM)], [SM] [3], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NanR repressor nanCp 4539920 4539925 6.5 caggtataaaGGTGCAccaagatagt nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/GS)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [CV(GEA/SM/GS)], [GEA], [GS], [SM] [1], [2], [4], [5], [6], [7]
proximal NanR repressor nanCp 4539928 4539933 -2.5 tggtataacaGGTATAaaggtgcacc nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/GS)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [CV(GEA/SM/GS)], [GEA], [GS], [SM] [1], [2], [4], [5], [6], [7]
proximal NanR repressor nanCp 4539937 4539942 -11.5 tttttgatctGGTATAacaggtataa nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/GS)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [CV(GEA/SM/GS)], [GEA], [GS], [SM] [1], [2], [4], [5], [6], [7]


Transcription unit          
Name: nanCM
Gene(s): nanM, nanC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: nanCp
+1: 4539928
Distance from start of the gene: 427
Sequence: aattgcaaatctggttttgttgtatggattgcgtgatttttgatctggtataacaggtatAaaggtgcaccaagatagtca
Evidence: [TIM]
Reference(s): [2] Condemine G., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator nanCp 4539979 4540000 -61.5 gatcgacataTTTTGTGACACGAATTGCAAATctggttttgt nd [AIBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NagC repressor nanCp 4539982 4540004 -65.0 aaaagatcgaCATATTTTGTGACACGAATTGCAaatctggttt nd [AIBSCS], [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [SM] [2], [4], [5]
remote NagC repressor nanCp 4540194 4540216 -277.0 aaccaggaaaCATATTTCATGATGAGAATTATGctcagcctga nd [AIBSCS], [APIORCISFBSCS], [BPP], [CV(CHIP-SV/SM)], [SM] [3], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NanR repressor nanCp 4539920 4539925 6.5 caggtataaaGGTGCAccaagatagt nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/GS)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [CV(GEA/SM/GS)], [GEA], [GS], [SM] [1], [2], [4], [5], [6], [7]
proximal NanR repressor nanCp 4539928 4539933 -2.5 tggtataacaGGTATAaaggtgcacc nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/GS)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [CV(GEA/SM/GS)], [GEA], [GS], [SM] [1], [2], [4], [5], [6], [7]
proximal NanR repressor nanCp 4539937 4539942 -11.5 tttttgatctGGTATAacaggtataa nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/GS)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [CV(GEA/SM/GS)], [GEA], [GS], [SM] [1], [2], [4], [5], [6], [7]


Transcription unit       
Gene(s): nanS   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


Transcription unit       
Name: yjhA
Gene(s): nanC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IHBCE] Inferred by a human based on computational evidence





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