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Name: | araE | |||||||||
Synonym(s): | OP00103 | |||||||||
Gene(s): | araE Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): |
[1] Ebright RH., et al., 1985 [2] Heffernan L., et al., 1976 [3] Stringer AM., et al., 2014 |
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Promoter | ||||||||||
Name: | araEp | |||||||||
+1: | 2982208 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 26 | |||||||||
Sequence: |
catatttatgctgtttccgacctgacacctgcgtgagttgttcacgtattttttcactatGtcttactctctgctggcagg -35 -10 +1 |
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Evidence: |
[ICWHO] [TIM] |
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Reference(s): |
[4] Huerta AM., et al., 2003 [5] Stoner C., et al., 1983 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | AraC-α-L-arabinopyranose | activator | araEp | 2982244 | 2982260 | -44.0 | tccatatttaTGCTGTTTCCGACCTGAcacctgcgtg | nd | [APIORCISFBSCS], [BPP] | [5] |
proximal | AraC-α-L-arabinopyranose | activator | araEp | 2982265 | 2982281 | -65.0 | cgacatgtcgCAGCAATTTAATCCATAtttatgctgt | nd | [APIORCISFBSCS], [BPP] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | araEp | 2982292 | 2982313 | -94.5 | ttaatttgaaAATTGGAATATCCATCACATAAcgacatgtcg | nd | [AIBSCS], [BPP] | [5] |
Name: | araE-ygeA | |||||||||
Gene(s): | ygeA, araE Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): | [3] Stringer AM., et al., 2014 | |||||||||
Promoter | ||||||||||
Name: | araEp | |||||||||
+1: | 2982208 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 26 | |||||||||
Sequence: |
catatttatgctgtttccgacctgacacctgcgtgagttgttcacgtattttttcactatGtcttactctctgctggcagg -35 -10 +1 |
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Evidence: |
[ICWHO] [TIM] |
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Reference(s): |
[4] Huerta AM., et al., 2003 [5] Stoner C., et al., 1983 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | AraC-α-L-arabinopyranose | activator | araEp | 2982244 | 2982260 | -44.0 | tccatatttaTGCTGTTTCCGACCTGAcacctgcgtg | nd | [APIORCISFBSCS], [BPP] | [5] |
proximal | AraC-α-L-arabinopyranose | activator | araEp | 2982265 | 2982281 | -65.0 | cgacatgtcgCAGCAATTTAATCCATAtttatgctgt | nd | [APIORCISFBSCS], [BPP] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | araEp | 2982292 | 2982313 | -94.5 | ttaatttgaaAATTGGAATATCCATCACATAAcgacatgtcg | nd | [AIBSCS], [BPP] | [5] |
Name: | ygeA |
Gene(s): | ygeA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for ygeA. This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
Evidence: | [ICWHO] Inferred computationally without human oversight [LTED] Length of transcript experimentally determined |
Reference(s): | [3] Stringer AM., et al., 2014 |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
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terminator | -21.6 | 2980724 | 2980757 | ctgatttcacGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTcgttaataga | |
terminator | -6.5 | 2982214 | 2982239 | acctgacaccTGCGTGAGTTGTTCACGTATTTTTTcactatgtct | |
anti-terminator | -7.4 | 2980747 | 2980777 | aagttgagaaATATCGGCGTCTGATTTCACGGGCCGGATGtgctgtacat | |
anti-terminator | -7.1 | 2982231 | 2982265 | tttaatccatATTTATGCTGTTTCCGACCTGACACCTGCGTGAGttgttcacgt | |
anti-anti-terminator | -9.0 | 2980765 | 2980795 | aaactgatggCAGGCGAGAAGTTGAGAAATATCGGCGTCTgatttcacgg | |
anti-anti-terminator | -4.99 | 2982255 | 2982282 | acgacatgtcGCAGCAATTTAATCCATATTTATGCTGtttccgacct |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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