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Name: | radD |
Gene(s): | radD Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF] Inferred computationally without human oversight |
Promoter | |
Name: | radDp |
+1: | 2280622 |
Sigma Factor: | Sigma54 Sigmulon |
Distance from start of the gene: | 10 |
Sequence: |
ctaataacatccctcaagggaaaaagatccatggcatactattagcagaataatctacctAcgcgagaccatgatttttac -24 -12 +1 |
Note(s): | This promoter was identified by microarray assays with a mutant σ54 strain and a σ54-overexpressing strain, and by σ54-related promoter element identification Zhao K,2010 We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ54-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 11 nucleotides between the transcription start site and the -12 box Barrios H,1999. |
Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IEP] |
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Zhao K., et al., 2010 |
Reference(s) |
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