RegulonDB RegulonDB 10.10: Operon Form

nimR operon and associated TUs in Escherichia coli K-12 genome

Name: nimR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yeaM
Gene(s): nimR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Name: nimRp
+1: 1875600
Distance from start of the gene: 24
Sequence: gttacaaacgaggctgtaccttaccgtttttattgttatgttgaatcaagctaaaatgacAaattatcgctaagttcggac
Evidence: [NTAS]
Reference(s): [1] Ogasawara H., et al., 2015
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NimR repressor nimRp 1875574 1875595 17.0 atgacaaattATCGCTAAGTTCGGACAAAATGatgcacaggt nd [BPP], [GEA], [ICWHO], [BPP], [GS], [ICWHO] [1], [2]
proximal NimR repressor nimRp 1875623 1875637 -29.5 ctgtaccttaCCGTTTTTATTGTTAtgttgaatca nd [BPP], [GEA], [ICWHO], [BPP], [GS], [ICWHO] [1], [2]
proximal NimR repressor nimRp 1875649 1875667 -57.5 gtcatatgctTCTCATTGTTACAAACGAGgctgtacctt nd [BPP], [GEA], [ICWHO], [BPP], [GS], [ICWHO] [1], [2]