RegulonDB RegulonDB 10.8: Operon Form
   

nimR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: nimR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yeaM
Gene(s): nimR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: nimRp
+1: 1875600
Distance from start of the gene: 24
Sequence: gttacaaacgaggctgtaccttaccgtttttattgttatgttgaatcaagctaaaatgacAaattatcgctaagttcggac
Evidence: [NAS]
Reference(s): [1] Ogasawara H., et al., 2015
TF binding sites (TFBSs)
[NimR,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NimR repressor nimRp 1875574 1875595 17.0 atgacaaattATCGCTAAGTTCGGACAAAATGatgcacaggt nd [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/GS)], [CV(GEA/ROMA)], [GEA], [GS], [ICWHO] [1], [2]
proximal NimR repressor nimRp 1875623 1875637 -29.5 ctgtaccttaCCGTTTTTATTGTTAtgttgaatca nd [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/GS)], [CV(GEA/ROMA)], [GEA], [GS], [ICWHO] [1], [2]
proximal NimR repressor nimRp 1875649 1875667 -57.5 gtcatatgctTCTCATTGTTACAAACGAGgctgtacctt nd [BPP], [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/GS)], [CV(GEA/ROMA)], [GEA], [GS], [ICWHO] [1], [2]


Evidence    

 [NAS] Non-traceable author statement

 [BPP] Binding of purified proteins

 [CV(CHIP-SV/GEA/GS)] cross validation(CHIP-SV/GEA/GS)

 [CV(CHIP-SV/GEA/ROMA)] cross validation(CHIP-SV/GEA/ROMA)

 [CV(GEA/GS)] cross validation(GEA/GS)

 [CV(GEA/ROMA)] cross validation(GEA/ROMA)

 [GEA] Gene expression analysis

 [GS] genomic SELEX

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Ogasawara H., Ohe S., Ishihama A., 2015, Role of transcription factor NimR (YeaM) in sensitivity control of Escherichia coli to 2-nitroimidazole., FEMS Microbiol Lett 362(1):1-8

 [2] Shimada T., Ogasawara H., Ishihama A., 2018, Single-target regulators form a minor group of transcription factors in Escherichia coli K-12., Nucleic Acids Res 46(8):3921-3936

RegulonDB