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Name: | yeaM | ||||||||||
Gene(s): | nimR Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit | ||||||||||
Promoter | |||||||||||
Name: | nimRp | ||||||||||
+1: | 1875600 | ||||||||||
Distance from start of the gene: | 24 | ||||||||||
Sequence: |
gttacaaacgaggctgtaccttaccgtttttattgttatgttgaatcaagctaaaatgacAaattatcgctaagttcggac |
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Evidence: | [AS-NAS] | ||||||||||
Reference(s): | [1] Ogasawara H., et al., 2015 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | NimR | repressor | nimRp | 1875574 | 1875595 | 17.0 | atgacaaattATCGCTAAGTTCGGACAAAATGatgcacaggt | nd | [COMP-AINF], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [1], [2] |
proximal | NimR | repressor | nimRp | 1875623 | 1875637 | -29.5 | ctgtaccttaCCGTTTTTATTGTTAtgttgaatca | nd | [COMP-AINF], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [1], [2] |
proximal | NimR | repressor | nimRp | 1875649 | 1875667 | -57.5 | gtcatatgctTCTCATTGTTACAAACGAGgctgtacctt | nd | [COMP-AINF], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [1], [2] |
Reference(s) |
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