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|
| Operon |  |
|---|---|
| Name: | pdeN |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | pdeN |
| Gene(s): | pdeN Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | Base on a σS-deficient rpoS mutant background, rtn is under the significant negative control of rpoS Sommerfeldt N,2009 This negative control is most likely due to increased formation of a vegetative or other alternative RNAP holoenzyme in the absence of competition of σS with the other sigma factors Sommerfeldt N,2009 This suggests that σS might control rtn expression indirectly. |
| Evidence: | [ICWHO] Inferred computationally without human oversight |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [1] Merino E, et al., 2005 |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -16.2 | 2270591 | 2270623 | gagttaactgAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTcattcatcag | |
| anti-terminator | -5.3 | 2270556 | 2270599 | aaaccgtttgGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTgcttaggcag | |
| anti-anti-terminator | -10.2 | 2270523 | 2270572 | acgaagcacgCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCtatcctgacg |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[1] Merino E, Yanofsky C., 2005, Transcription attenuation: a highly conserved regulatory strategy used by bacteria., Trends Genet. 2005 May;21(5):260-4.