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Name: | pdeL |
Synonym(s): | yahA |
Gene(s): | pdeL Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | pdeLp2 |
+1: | 331873 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 498 |
Sequence: |
tttattgaatgttttaaatattgtttttattggcattgctataatattggttatcatttgCtgaatggattcagtcttaat -35 -10 +1 |
Evidence: |
[ICWHO] [IDA] |
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Shimada T., et al., 2005 |
Name: | pdeL | |||||||||
Synonym(s): | yahA | |||||||||
Gene(s): | pdeL Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [ICWHO] Inferred computationally without human oversight |
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Reference(s): | [1] Shimada T., et al., 2005 | |||||||||
Promoter | ||||||||||
Name: | pdeLp1 | |||||||||
+1: | 332039 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 332 | |||||||||
Sequence: |
ctatgtgtttatgagggagaggtattttcagttgatctggattgttaaattcatataatgCgcctttgctcatgaatggat -35 -10 +1 |
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Evidence: |
[HTTIM] [IDA] [IHBCE] |
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Reference(s): |
[4] Maciag A., et al., 2011 [1] Shimada T., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | pdeLp1 | 331871 | 331888 | -159.5 | ggttatcattTGCTGAATGGATTCAGTCttaatgagtg | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
proximal | Cra | repressor | pdeLp1 | 332017 | 332034 | -13.5 | cagttgatctGGATTGTTAAATTCATATaatgcgcctt | nd | [GEA], [AIBSCS] | [1] |
Name: | pdeL |
Gene(s): | pdeL Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | pdeLp3 |
+1: | 332043 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 328 |
Sequence: |
gtgtttatgagggagaggtattttcagttgatctggattgttaaattcatataatgcgccTttgctcatgaatggatgcca -10 +1 |
Note(s): | Based on ChIp-chip analysis, it was shown that H-NS plays a role in pdeL expression Uyar E, Kurokawa K, Yoshimura M, Ishikawa S, Ogasawara N, Oshima T,2009 Transcription directed across H-NS binding regions relieves H-NS-mediated (and H-NS/StpA-mediated) repression of promoters such as proVp3, pdeLp3, and appYp2, and there is a correlation between transcription across the H-NS-bound region and derepression where RNA polymerase is able to remodel the H-NS complex and/or dislodge H-NS from the DNA and thus relieve repression Rangarajan AA,2018 |
Evidence: |
[IHBCE] [TIM] |
Reference(s): | [5] Rangarajan AA., et al., 2018 |
Reference(s) |
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