RegulonDB RegulonDB 11.1: Operon Form

tcyP operon and associated TUs in Escherichia coli K-12 genome

Name: tcyP
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: tcyP
Gene(s): tcyP   Genome Browser M3D Gene expression COLOMBOS
Note(s): tcyP expression is activated in sulfate-containing medium and repressed in cysteine-containing medium Chonoles Imlay KR,2015
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Chonoles Imlay KR., et al., 2015
Name: tcyPp
+1: 1810882
Distance from start of the gene: 52
Sequence: tggaataagcaattccatttgaatataagagccagctcacagttctgttaatcttgcgccAacactatgactgctacgcag
Reference(s): [1] Chonoles Imlay KR., et al., 2015
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd CysB activator tcyPp nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [1]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.4 1810887 1810907 cgccaacactATGACTGCTACGCAGTGATAgaaataataa
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"