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| Operon |  |
|---|---|
| Name: | tcyP |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | tcyP |
| Gene(s): | tcyP Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | tcyP expression is activated in sulfate-containing medium and repressed in cysteine-containing medium Chonoles Imlay KR,2015 |
| Evidence: | [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Chonoles Imlay KR., et al., 2015 |
| Promoter | |
| Name: | tcyPp |
| +1: | 1810882 |
| Distance from start of the gene: | 52 |
| Sequence: |
tggaataagcaattccatttgaatataagagccagctcacagttctgttaatcttgcgccAacactatgactgctacgcag |
| Evidence: |
[RS-EPT-CBR] [TIM] |
| Reference(s): |
[1] Chonoles Imlay KR., et al., 2015 [2] Salgado H, et al., 2012 |
| Note(s): | 1tcyP transcription is activated by CysB when cysteine is scarce Chonoles Imlay KR,2015 There is a likely CysB-binding site 100 bp upstream of the promoter Chonoles Imlay KR,20151tcyP transcription is activated by CysB when cysteine is scarce Chonoles Imlay KR,2015 There is a likely CysB-binding site 100 bp upstream of the promoter Chonoles Imlay KR,2015 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | forward |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [3] Merino E, et al., 2005 |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -6.4 | 1810887 | 1810907 | cgccaacactATGACTGCTACGCAGTGATAgaaataataa |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates