RegulonDB RegulonDB 11.0: Operon Form

pdeF operon and associated TUs in Escherichia coli K-12 genome

Name: pdeF
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yfgF
Gene(s): pdeF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Name: yfgFp
+1: 2629031
Distance from start of the gene: 93
Sequence: gggttattttgtttgatatatatcaattggtactttcatatgacacttagaatcaatgctCtctatagtgatgaataatca
Evidence: [TIM]
Reference(s): [1] Lacey MM., et al., 2010
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator yfgFp 2629066 2629079 -41.5 gttattttgtTTGATATATATCAAttggtacttt nd [GEA], [APIORCISFBSCS], [BPP] [1]