Name: |
decR |
Gene(s): |
decR
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
decRp |
+1: |
468352 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
31
|
Sequence: |
tgccgtggtgtttaaaccgcacagaataaattgtcgtgatttcacctttaaaataaaattAaaagagaaaaaaattctctg -35 -10 +1
|
Note(s): |
We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box Harley CB, Reynolds RP,1987. |
Evidence: |
[AIPP] [ICWHO]
|
Reference(s): |
[1] Huerta AM., et al., 2003
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
MarA
|
activator |
decRp |
468277
|
468296
|
-65.0
|
tttttgcgttGAATTTGTCATTTTGTGCCGtggtgtttaa |
nd
|
[AIBSCS]
|
[2]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
MarA |
activator |
decRp |
468277
|
468296
|
-65.0
|
tttttgcgttGAATTTGTCATTTTGTGCCGtggtgtttaa
|
nd
|
[2]
|
SoxS |
activator |
decRp |
468279
|
468298
|
-63.0
|
tttgcgttgaATTTGTCATTTTGTGCCGTGgtgtttaaac
|
[RSE]
|
[3]
|