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Name: | rplU-rpmA-yhbE-obgE | ||||||||||
Gene(s): | obgE, yhbE, rpmA, rplU Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | It has been observed that the transcriptional regulator IHF binds in the intergenic region of the genes dacB and obgE Kasho K,2021. | ||||||||||
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined [EXP-IEP-COREGULATION] Inferred through co-regulation |
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Reference(s): | [1] Maouche R., et al., 2016 | ||||||||||
Promoter | |||||||||||
Name: | rplUp | ||||||||||
+1: | 3333516 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 65 | ||||||||||
Sequence: |
ttcttcgtgtattgactgtagcacttgtcaaaggcgtgcgttttgcgtaatattcgcgccCtattgtgaatatttatagcg -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Maouche R., et al., 2016 [3] Salgado H, et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | MlrA | activator | rplUp | 3333585 | 3333619 | -85.5 | attgtactgaAAAAATGGCACAGATAAACGTTACCGTACAAGTTGtgtttttttt | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [4] |
Allosteric regulation of RNA-polymerase |
Regulator | Function | Promoter target of RNApol | Growth Conditions | Note | Evidence | Reference | |
---|---|---|---|---|---|---|---|
DksA-ppGpp | inhibition | rplUp | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | [5] |
Evidence: | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis |
Reference(s): | [5] Aseev LV., et al., 2016 |
Name: | rplU-rpmA | ||||||||||
Gene(s): | rpmA, rplU Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Reference(s): | [6] Kitakawa M., et al., 1979 | ||||||||||
Promoter | |||||||||||
Name: | rplUp | ||||||||||
+1: | 3333516 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 65 | ||||||||||
Sequence: |
ttcttcgtgtattgactgtagcacttgtcaaaggcgtgcgttttgcgtaatattcgcgccCtattgtgaatatttatagcg -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Maouche R., et al., 2016 [3] Salgado H, et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | MlrA | activator | rplUp | 3333585 | 3333619 | -85.5 | attgtactgaAAAAATGGCACAGATAAACGTTACCGTACAAGTTGtgtttttttt | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [4] |
Allosteric regulation of RNA-polymerase |
Regulator | Function | Promoter target of RNApol | Growth Conditions | Note | Evidence | Reference | |
---|---|---|---|---|---|---|---|
DksA-ppGpp | inhibition | rplUp | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | [5] |
Evidence: | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis |
Reference(s): | [5] Aseev LV., et al., 2016 |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -18.0 | 3332806 | 3332833 | acggatgaaaGCCCCGCAACACGTTGCGGGGCTTTTTacattcgata |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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