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Name: | pqiABC |
Gene(s): | pqiA, pqiB, pqiC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [PM] Polar mutation |
Reference(s): |
[1] Koh YS., et al., 1996 [2] Nakayama T., et al., 2017 |
Promoter | |
Name: | pqiAp |
+1: | 1011659 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 342 |
Sequence: |
gaagccgccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaaTtgcagcgcgaactggagcag -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] [IDA] [TIM] |
Reference(s): |
[3] Huerta AM., et al., 2003 [1] Koh YS., et al., 1996 |
Name: | pqiABC |
Gene(s): | pqiA, pqiB, pqiC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [PM] Polar mutation |
Reference(s): |
[1] Koh YS., et al., 1996 [2] Nakayama T., et al., 2017 |
Promoter | |
Name: | pqiAp2 |
+1: | 1011659 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 342 |
Sequence: |
gaagccgccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaaTtgcagcgcgaactggagcag -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] [IDA] [TIM] |
Reference(s): |
[3] Huerta AM., et al., 2003 [1] Koh YS., et al., 1996 |
Name: | pqiABC | |||||||||
Gene(s): | pqiA, pqiB, pqiC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The pqiABC operon is related to the Mla transport pathway and is important for membrane integrity Nakayama T,2017. | |||||||||
Evidence: | [PM] Polar mutation | |||||||||
Reference(s): |
[1] Koh YS., et al., 1996 [2] Nakayama T., et al., 2017 |
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Promoter | ||||||||||
Name: | pqiAp1 | |||||||||
+1: | 1011666 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 335 | |||||||||
Sequence: |
ccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaattgcagcGcgaactggagcagctaccgc -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [IDA] [TIM] |
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Reference(s): |
[3] Huerta AM., et al., 2003 [4] Imashimizu M., et al., 2020 [5] Koh YS., et al., 1995 [1] Koh YS., et al., 1996 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | MarA | activator | pqiAp1 | 1011614 | 1011633 | -42.5 | cgccgcggcaAAAGCAGAAACTGTAAAACGcagcagtagc | nd | [GEA], [APIORCISFBSCS], [BPP] | [6], [7] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | SoxS | activator | pqiAp1 | 1011616 | 1011635 | -40.0 | ccgcggcaaaAGCAGAAACTGTAAAACGCAgcagtagcaa | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [1], [6] |
Name: | pqiABC | |||||||||
Gene(s): | pqiA, pqiB, pqiC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The pqiABC operon is related to the Mla transport pathway and is important for membrane integrity Nakayama T,2017. | |||||||||
Evidence: | [PM] Polar mutation | |||||||||
Reference(s): |
[1] Koh YS., et al., 1996 [2] Nakayama T., et al., 2017 |
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Promoter | ||||||||||
Name: | pqiAp3 | |||||||||
+1: | 1011666 | |||||||||
Sigma Factor: | Sigma38 Sigmulon | |||||||||
Distance from start of the gene: | 335 | |||||||||
Sequence: |
ccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaattgcagcGcgaactggagcagctaccgc -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [IDA] [TIM] |
|||||||||
Reference(s): |
[3] Huerta AM., et al., 2003 [5] Koh YS., et al., 1995 [1] Koh YS., et al., 1996 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | MarA | activator | pqiAp3 | 1011614 | 1011633 | -42.5 | cgccgcggcaAAAGCAGAAACTGTAAAACGcagcagtagc | nd | [GEA], [APIORCISFBSCS], [BPP] | [6], [7] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | SoxS | activator | pqiAp3 | 1011616 | 1011635 | -40.0 | ccgcggcaaaAGCAGAAACTGTAAAACGCAgcagtagcaa | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [1], [6] |
Name: | ymbA |
Gene(s): | pqiC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IHBCE] Inferred by a human based on computational evidence |
Reference(s) |
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