RegulonDB RegulonDB 10.9: Operon Form
   

ccp operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ccp
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yhjA
Gene(s): ccp   Genome Browser M3D Gene expression COLOMBOS
Note(s): FNR and OxyR, which occupy the yhjAp promoter simultaneously, respond to two seemingly incompatible signals: oxygen starvation and peroxide stress Partridge JD,2007
Evidence: [ICWHO] Inferred computationally without human oversight
Reference(s): [1] Partridge JD., et al., 2007
Promoter
Name: yhjAp
+1: 3669261
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 73
Sequence: tcatgtaattgattgattcctatcaaaaagcgtatctccctgttttttatgatggctttgTctcgcagagacgtttgcagc
                      -35                       -10         +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Partridge JD., et al., 2007
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator yhjAp 3669296 3669309 -41.5 catgtaattgATTGATTCCTATCAAaaagcgtatc nd [AIBSCS], [BPP] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal OxyR activator yhjAp 3669317 3669333 -64.0 gctatcttatTGATAGTTTATATTCATGtaattgattg nd [APIORCISFBSCS], [BPP] [1]
proximal OxyR activator yhjAp 3669339 3669355 -86.0 ctgatctgggTAATAGGCACAGGCTATCttattgatag nd [AIBSCS], [BPP], [CEEUMA], [IHBCE], [RSE] [1], [3]





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