RegulonDB RegulonDB 11.1: Operon Form
   

ccp operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ccp
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yhjA
Gene(s): ccp   Genome Browser M3D Gene expression COLOMBOS
Note(s): FNR and OxyR, which occupy the yhjAp promoter simultaneously, respond to two seemingly incompatible signals: oxygen starvation and peroxide stress Partridge JD,2007
Evidence: [COMP-AINF] Inferred computationally without human oversight
Reference(s): [1] Partridge JD., et al., 2007
Promoter
Name: yhjAp
+1: 3669261
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 73
Sequence: tcatgtaattgattgattcctatcaaaaagcgtatctccctgttttttatgatggctttgTctcgcagagacgtttgcagc
                           -35                       -10    +1                   
Evidence: [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [2] Huerta AM., et al., 2003
[1] Partridge JD., et al., 2007
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator yhjAp 3669296 3669309 -41.5 atgtaattgaTTGATTCCTATCAAaaagcgtatc nd [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] nd [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal OxyR activator yhjAp 3669317 3669333 -64.0 ctatcttattGATAGTTTATATTCATGtaattgattg nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] nd [1]
proximal OxyR activator yhjAp 3669339 3669355 -86.0 tgatctgggtAATAGGCACAGGCTATCttattgatag nd [EXP-IEP-RNA-SEQ], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF], [EXP-CHIP-EXO-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [1], [3]





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