Name: |
yhjA |
Gene(s): |
ccp
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
FNR and OxyR, which occupy the yhjAp promoter simultaneously, respond to two seemingly incompatible signals: oxygen starvation and peroxide stress Partridge JD,2007 |
Evidence: |
[COMP-AINF] Inferred computationally without human oversight |
Reference(s): |
[1] Partridge JD., et al., 2007
|
Promoter |
|
Name: |
yhjAp |
+1: |
3669261 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
73
|
Sequence: |
tcatgtaattgattgattcctatcaaaaagcgtatctccctgttttttatgatggctttgTctcgcagagacgtttgcagc -35 -10 +1
|
Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
|
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Partridge JD., et al., 2007
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
OxyR |
activator |
yhjAp |
3669339
|
3669355
|
-86.0
|
tgatctgggtAATAGGCACAGGCTATCttattgatag
|
[EXP-IEP-RNA-SEQ]
|
[1], [3]
|
OxyR |
activator |
yhjAp |
3669317
|
3669333
|
-64.0
|
ctatcttattGATAGTTTATATTCATGtaattgattg
|
nd
|
[1]
|
FNR |
activator |
yhjAp |
3669296
|
3669309
|
-41.5
|
atgtaattgaTTGATTCCTATCAAaaagcgtatc
|
nd
|
[1]
|