RegulonDB RegulonDB 10.9: Operon Form
   

ybgI-pxpBCA-nei operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ybgI-pxpBCA-nei
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ybgIJKL-nei
Gene(s): ybgI, pxpB, pxpC, pxpA, nei   Genome Browser M3D Gene expression COLOMBOS
Note(s): Downstream of the nei gene, there are two putative rho-dependent terminators of transcription Gifford CM,2000.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Gifford CM., et al., 2000
Promoter
Name: ybgIp1
+1: 742619
Distance from start of the gene: 208
Sequence: taattccacaattgacggcaacgtcacgtaatagttgcgcggcgtgcttgtgtttccttaAagttaaaactttgatacaga
Evidence: [TIM]
Reference(s): [1] Gifford CM., et al., 2000


Transcription unit       
Name: ybgIJKL-nei
Gene(s): ybgI, pxpB, pxpC, pxpA, nei   Genome Browser M3D Gene expression COLOMBOS
Note(s): Downstream of the nei gene, there are two putative rho-dependent terminators of transcription Gifford CM,2000.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Gifford CM., et al., 2000
Promoter
Name: ybgIp2
+1: 742798
Distance from start of the gene: 29
Sequence: tcttaatatgtcaaaagattggctatcgacgaactggcgaggtaacgctatgttaacggtGtagctatcagaatacggaag
Evidence: [RS-EPT-CBR]
[TIM]
Reference(s): [1] Gifford CM., et al., 2000
[2] Salgado H, et al., 2012


Transcription unit       
Name: nei
Gene(s): nei   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [3] Li Z., et al., 2019
Promoter
Name: neip
+1: 745904
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 31
Sequence: tcgcccgccgactacgctctgcatttgccgaaaaggggattgttgtcgcagcataaccccGattaataaagaatgaaaaaa
                         -35                        -10     +1                   
Evidence: [ICWHO]
[RSE]
[TIM]
Reference(s): [3] Li Z., et al., 2019





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