RegulonDB RegulonDB 10.9: Operon Form

rfe-wzzE-wecBC-rffGHC-wecE-wzxE-wecF-wzyE-rffM operon and associated TUs in Escherichia coli K-12 genome

Name: rfe-wzzE-wecBC-rffGHC-wecE-wzxE-wecF-wzyE-rffM
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: rfe-wzzE-wecBC-rffGHC-wecE-wzxE-wecF-wzyE-rffM
Gene(s): rfe, wzzE, wecB, wecC, rffG, rffH, rffC, wecE, wzxE, wecF, wzyE, rffM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: rfep
+1: 3967800
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 116
Sequence: aatgccgcgctggcgatgttaggaaaattcctggaatttgctggcatgttatgcaatttgCatatcaaatggttaattttt
                   -35                       -10            +1                   
Evidence: [AIPP]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NsrR repressor rfep 3967794 3967805 -1.0 catgttatgcAATTTGCATATCaaatggttaa nd [APIORCISFBSCS], [GEA] [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -17.6 3967688 3967727 ttgtcttatgCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATatctgtaatc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"