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Name: | yjeFE-amiB-mutL-miaA-hfq-hflXKC |
Synonym(s): | ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC |
Gene(s): | nnr, tsaE, amiB, mutL, miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): |
[1] Kitagawa R., et al., 1996 [2] Tsui HC., et al., 1996 [3] Tsui HC., et al., 1994 [4] Tsui HC., et al., 1994 |
Promoter | |
Name: | yjeFp1 |
+1: | 4393677 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 389 |
Sequence: |
tttcagctaacgggcgctcgagaataggcgcagaatcgacaaacggtctaaaattcagcgAaacacaatgttgctgaatca -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): |
[5] Huerta AM., et al., 2003 [1] Kitagawa R., et al., 1996 [6] Maciag A., et al., 2011 |
Name: | yjeFE-amiB-mutL-miaA-hfq-hflXKC |
Synonym(s): | ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC |
Gene(s): | nnr, tsaE, amiB, mutL, miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): | [1] Kitagawa R., et al., 1996 |
Promoter | |
Name: | yjeFp2 |
+1: | 4393937 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 129 |
Sequence: |
cgagcgcgcagcataccgtgacgtgccatccagtccatttcgccgtggtattgtttgtccAgccatgcttgcagtttgggc -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
Reference(s): |
[5] Huerta AM., et al., 2003 [1] Kitagawa R., et al., 1996 [6] Maciag A., et al., 2011 [7] Salgado H, et al., 2012 |
Name: | yjeFE-amiB-mutL-miaA-hfq-hflXKC |
Synonym(s): | ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC |
Gene(s): | nnr, tsaE, amiB, mutL, miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): | [1] Kitagawa R., et al., 1996 |
Promoter | |
Name: | yjeFp3 |
+1: | 4394035 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 31 |
Sequence: |
ggtatcggtaatacctacctgctgaaagcccagttccagcccccactgtttaattttttgCgctaactgattgagatcgag -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): |
[5] Huerta AM., et al., 2003 [1] Kitagawa R., et al., 1996 [6] Maciag A., et al., 2011 |
Name: | mutL-miaA-hfq-hflXKC |
Gene(s): | mutL, miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | mutLp2 |
+1: | 4397046 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 366 |
Sequence: |
ctgctgggtggggcgggtgatgtgctggcgaacagtcagtctgacccctatttaagccagGcggtgctggatttacagttc -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [COMP-HINF-SIMILAR-TO-CONSENSUS] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
Reference(s): |
[5] Huerta AM., et al., 2003 [2] Tsui HC., et al., 1996 |
Name: | mutL-miaA-hfq-hflXKC |
Gene(s): | mutL, miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | mutLp1 |
+1: | 4397100 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 312 |
Sequence: |
agccaggcggtgctggatttacagttcggtcattcccagcgggtagggtatgatgtagcgAccagtatgatcagtcagttg -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
Reference(s): |
[5] Huerta AM., et al., 2003 [7] Salgado H, et al., 2012 [2] Tsui HC., et al., 1996 |
Name: | miaA-hfq-hflXKC |
Gene(s): | miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation |
Reference(s): | [8] Nonaka G., et al., 2006 |
Promoter | |
Name: | miaAp2 |
+1: | 4398982 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 270 |
Sequence: |
agtctgccctggcggaattgggtattgatttccagtcagatgcacagcatgtgaccatcaGggcagtgcctttacccttac -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [COMP-HINF-SIMILAR-TO-CONSENSUS] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
Reference(s): |
[5] Huerta AM., et al., 2003 [2] Tsui HC., et al., 1996 |
Name: | miaA-hfq-hflXKC |
Gene(s): | miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation |
Reference(s): | [8] Nonaka G., et al., 2006 |
Promoter | |
Name: | miaAp1 |
+1: | 4399052 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 200 |
Sequence: |
tttacccttacgccaacaaaatttacaaatcttgattcctgaactgataggctacctggcGaagcagtccgtattcgaacc -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] [RS-EPT-CBR] |
Reference(s): |
[5] Huerta AM., et al., 2003 [7] Salgado H, et al., 2012 [2] Tsui HC., et al., 1996 |
Name: | hfq-hflXKC |
Gene(s): | hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation |
Reference(s): | [8] Nonaka G., et al., 2006 |
Promoter | |
Name: | hfqp2 |
+1: | 4399801 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 487 |
Sequence: |
gatccacaaaggctttcccgggcactggaagtttttttcatttcgggtaaaactttaacgGaactgacgcaaacgtcagga -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
Reference(s): |
[5] Huerta AM., et al., 2003 [2] Tsui HC., et al., 1996 [9] Zaslaver A., et al., 2006 |
Name: | hfq-hflXKC | ||||||||||
Gene(s): | hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation | ||||||||||
Reference(s): | [8] Nonaka G., et al., 2006 | ||||||||||
Promoter | |||||||||||
Name: | hfqp3 | ||||||||||
+1: | 4400220 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 68 | ||||||||||
Sequence: |
gcgtgacgaagtattacaggttgttggtgctatcgcaggctgaatgtgtacaattgagacGtatcgtgcgcaattttttca -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
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Reference(s): |
[5] Huerta AM., et al., 2003 [7] Salgado H, et al., 2012 [2] Tsui HC., et al., 1996 [9] Zaslaver A., et al., 2006 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | CRP-cyclic-AMP | repressor | hfqp3 | 4400113 | 4400135 | -96.5 | ctggctgcgtGGTTGGGAAGGGGTTCACTGGCTtgacagtgaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [10] |
Name: | tsaE-amiB-mutL-miaA-hfq-hflXKC |
Synonym(s): | yjeE-amiB-mutL-miaA-hfq-hflXKC |
Gene(s): | tsaE, amiB, mutL, miaA, hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | tsaEp |
+1: | Unknown |
Note(s): | Promoter activity for the yjeE gene was described by Mangat and Brown (2008) Mangat CS,2008and was based on gene expression analysis. The transcriptional start site for the yjeE gene has not been determined experimentally. |
Evidence: | [EXP-IEP] |
Reference(s): | [11] Mangat CS., et al., 2008 |
Name: | hfq-hflXKC |
Gene(s): | hfq, hflX, hflK, hflC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation |
Reference(s): | [8] Nonaka G., et al., 2006 |
Promoter | |
Name: | hfqp1 |
+1: | Unknown |
Sigma Factor: | Sigma32 Sigmulon |
Evidence: |
[COMP-HINF-POSITIONAL-IDENTIFICATION] [COMP-HINF-SIMILAR-TO-CONSENSUS] [EXP-IDA] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
Reference(s): | [2] Tsui HC., et al., 1996 |
Reference(s) |
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