RegulonDB RegulonDB 10.10: Operon Form
   

gdx operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: gdx
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: sugE
Gene(s): gdx   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Greener T., et al., 1993
Promoter
Name: sugEp
+1: 4376794
Distance from start of the gene: 81
Sequence: gttttttctgcgatagtcacaaaggtaatagttgaaattcccctgccacctggcaaaataTccgttcaaccatcagctttg
Evidence: [TIM]
Reference(s): [1] Greener T., et al., 1993


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -19.1 4376699 4376742 gcagcaataaGCAATAACGGTACGACAGCTGTGTCGTGCCGTTTGTTTTTTCTgcgatagtca
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"
REGULATION, RNA cis-regulatory element:  
Rfam type: Cis-reg
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] null null
  Description Rfam score Left Pos Right Pos Sequence (RNA-strand)
  mini-ykkC RNA motif 50.3 4376811 4376857 aaccaucagcUUUGCAGGACGACCUGCAAACGCCUCUUUUCACCGGGGACGGCCCCAauucuccgga
Notes: "The provied "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appears as the reverse complement of the sequence delimited by LeftPos-RightPos"





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