|
|
| Operon |  |
|---|---|
| Name: | gdx |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | sugE |
| Gene(s): | gdx Genome Browser M3D Gene expression COLOMBOS |
| Reference(s): | [1] Greener T., et al., 1993 |
| Promoter | |
| Name: | sugEp |
| +1: | 4376794 |
| Distance from start of the gene: | 81 |
| Sequence: |
gttttttctgcgatagtcacaaaggtaatagttgaaattcccctgccacctggcaaaataTccgttcaaccatcagctttg |
| Evidence: | [TIM] |
| Reference(s): | [1] Greener T., et al., 1993 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -19.1 | 4376699 | 4376742 | gcagcaataaGCAATAACGGTACGACAGCTGTGTCGTGCCGTTTGTTTTTTCTgcgatagtca |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| REGULATION, RNA cis-regulatory element: | |
| Rfam type: | Cis-reg |
| Strand: | forward |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [2] null null |
| Description | Rfam score | Left Pos | Right Pos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| mini-ykkC RNA motif | 50.3 | 4376811 | 4376857 | aaccaucagcUUUGCAGGACGACCUGCAAACGCCUCUUUUCACCGGGGACGGCCCCAauucuccgga |
| Notes: "The provied "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appears as the reverse complement of the sequence delimited by LeftPos-RightPos" |
[TIM] Transcription initiation mapping