RegulonDB RegulonDB 10.10: Operon Form
   

yggSTU-rdgB-hemW operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yggSTU-rdgB-hemW
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rdgB-yggW
Gene(s): rdgB, hemW   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: rdgBp
+1: 3096620
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 61
Sequence: cgggttgccaaaagccaggtggtgattgaaaaaggcgaacttggccgccacaaacaaattAaaatcattaatccgcaacaa
                          -35                 -10           +1                   
Note(s): We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ32-dependent promoters, whose transcription start sites were determined experimentally, are present a distance of 7 nucleotides between the transcription start site and the -10 box Nonaka G,2006.
Evidence: [AIBSCS]
[AIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Nonaka G., et al., 2006


Transcription unit       
Name: yggSTU-rdgB-hemW
Gene(s): yggS, yggT, yggU, rdgB, hemW   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


Evidence    

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Nonaka G., Blankschien M., Herman C., Gross CA., Rhodius VA., 2006, Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress., Genes Dev 20(13):1776-89

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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