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|
| Operon |  |
|---|---|
| Name: | ycjMNOPQRSTUV-ymjB-ompG |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | ycjMNOPQRSTUV-ymjB-ompG |
| Gene(s): | ycjM, ycjN, ycjO, ycjP, ycjQ, ycjR, ycjS, ycjT, ycjU, ycjV, ymjB, ompG Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The computational prediction for this TU does not contain the ompG gene, but the coregulation analysis indicates that it does Luhachack L,2019. A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for ycjS. This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [IC] Inferred by curator [ICWHO] Inferred computationally without human oversight [ITCR] Inferred through co-regulation |
| Reference(s): | [1] Luhachack L., et al., 2019 |
| Name: | ompG |
| Gene(s): | ompG Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [ICWHO] Inferred computationally without human oversight |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -15.2 | 1370017 | 1370060 | attcaccatgAGCGGCGCTTATGCGCCGTTTTTTTTTCTGTCACACCTTATTTacatccccat | |
| terminator | -12.0 | 1381908 | 1381925 | ctaaatacagGGGGAAGGCATTCCCCCaggataatac | |
| anti-terminator | -7.8 | 1369984 | 1370024 | acatcgcaatGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGcttatgcgcc | |
| anti-anti-terminator | -11.7 | 1369959 | 1370000 | gttgagaacgCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTtaaaagaatt |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[1] Luhachack L., Rasouly A., Shamovsky I., Nudler E., 2019, Transcription factor YcjW controls the emergency H2 S production in E. coli., Nat Commun 10(1):2868