RegulonDB RegulonDB 10.10: Operon Form

quuD operon and associated TUs in Escherichia coli K-12 genome

Name: quuD
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ybcQ
Gene(s): quuD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [1] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.8 573770 573812 ttcgccaccgCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTgaccgattac
  anti-terminator -9.41 573752 573783 ttaatatggcAGAACTTCTTCGCCACCGCTGGGGGCGTCTGcgcttatatc
  anti-anti-terminator -4.8 573749 573767 agtttaatatGGCAGAACTTCTTCGCCAccgctggggg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"


 [1] Merino E, Yanofsky C., 2005, Transcription attenuation: a highly conserved regulatory strategy used by bacteria., Trends Genet. 2005 May;21(5):260-4.