RegulonDB RegulonDB 11.2: Operon Form

rcdB operon and associated TUs in Escherichia coli K-12 genome

Name: rcdB
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yhjC
Gene(s): rcdB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Name: yhjCp
+1: 3672136
Sigma Factor: Sigma54 Sigmulon
Distance from start of the gene: 278
Sequence: aaaacaattttgaggatttccttatattggtggttagtacgcatgcaattaaaaatgaaaTtccgcgaccacaagccaaaa
                               -24          -12             +1                   
Note(s): This promoter was identified by microarray assays with a mutant σ54 strain and a σ54-overexpressing strain, and by σ54-related promoter element identification Zhao K,2010
We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ54-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 11 nucleotides between the transcription start site and the -12 box Barrios H,1999.
Evidence: [COMP-AINF]
Reference(s): [1] Huerta AM., et al., 2003
[2] Zhao K., et al., 2010
TF binding sites (TFBSs)