RegulonDB RegulonDB 10.10: Operon Form
   

dxr-ispZU-cdsA operon and associated TUs in Escherichia coli K-12 genome

Operon      
Name: dxr-ispZU-cdsA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: uppS-cdsA
Gene(s): ispZ, ispU, cdsA   Genome Browser M3D Gene expression COLOMBOS
Note(s): The transcription unit uppS-cdsA is sustainably induced at low temperature Sawasato K,2019.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Sawasato K., et al., 2019
Promoter
Name: ispUp1
+1: 194784
Distance from start of the gene: 0
Sequence: tccggctacagagagtcgcgctatttgttagcgtagggcttcagtgatatagtctgcgccAtctgatcgtaagtagttggc
Evidence: [HTTIM]
Reference(s): [2] Mendoza-Vargas A., et al., 2009


Transcription unit       
Name: uppS-cdsA
Gene(s): ispU, cdsA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Sawasato K., et al., 2019
Promoter
Name: ispUp2
+1: 194901
Distance from start of the gene: 2
Sequence: tttttttgtataggcttcagtattcctgagtaccgtaaaccctgtcagggaataaaaaacGcgtgatgttgtctgctactc
Evidence: [HTTIM]
Reference(s): [2] Mendoza-Vargas A., et al., 2009


Transcription unit       
Name: dxr-uppS-cdsA
Gene(s): dxr, ispU, cdsA   Genome Browser M3D Gene expression COLOMBOS
Note(s): The transcription unit drx-uppS-cdsA is transiently induced at low temperature Sawasato K,2019.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Sawasato K., et al., 2019


Transcription unit       
Name: cdsA
Gene(s): cdsA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IHBCE] Inferred by a human based on computational evidence


Evidence    

 [HTTIM] High-throughput transcription initiation mapping



Reference(s)    

 [1] Sawasato K., Sekiya Y., Nishiyama KI., 2019, Two-step induction of cdsA promoters leads to upregulation of the glycolipid MPIase at cold temperature., FEBS Lett 593(14):1711-1723

 [2] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526


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