RegulonDB RegulonDB 10.9: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [ArcA,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[ArcA,-] Regulatory phrases      

[ArcA,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [ArcA,-,-57]   hybOp1
    [ArcA,-,-47]   gltAp1
    [ArcA,-,-38]   fadLp
    [ArcA,-,-34]   acnAp2
    [ArcA,-,-29]   fadBp
    [ArcA,-,-29]   arcZp
    [ArcA,-,-22]   tpxp
    [ArcA,-,-17]   fadIp
    [ArcA,-,-7]   fadDp
    [ArcA,-,1.5]   ompWp
    [ArcA,-,15]   fadEp
    [ArcA,-,16]   ydeAp
    [ArcA,-,19]   fadHp
    [ArcA,-,27]   mdhp1
    [ArcA,-,-74] [ArcA,-,-6]   betIp
    [ArcA,-,-64] [ArcA,-,24]   rpoSp
    [ArcA,-,-27] [ArcA,-,-18]   lpdAp
    [ArcA,-,-18] [ArcA,-,10]   lldPp
    [ArcA,-,-3] [ArcA,-,16]   icdAp1
    [ArcA,-,3] [ArcA,-,15]   betTp
    [ArcA,-,-85] [ArcA,-,-48] [ArcA,-,2]   ptsGp1
    [ArcA,-,-38] [ArcA,-,-21] [ArcA,-,-10]   sodAp
  [ArcA,-,-148.5] [ArcA,-,-105.5] [ArcA,-,-65.5] [ArcA,-,-2.5]   uvrAp
  [ArcA,-,-170] [ArcA,-,-143] [ArcA,-,-139] [ArcA,-,-119] [ArcA,-,-113] [ArcA,-,-57] [ArcA,-,-48]   acnBp
  [ArcA,-,-153.5] [ArcA,-,-90.5] [ArcA,-,-50.5] [ArcA,-,-7.5]   ssbp1
  [ArcA,-,-141.5] [ArcA,-,-78.5] [ArcA,-,-38.5] [ArcA,-,5.5]   ssbp2
  [ArcA,-,-157] [ArcA,-,-137] [ArcA,-,-5] [ArcA,-,2] [ArcA,-,13]   aldAp
    [ArcA,-,-57] [ArcA,-,36] [ArcA,-,52] [ArcA,-,57] [ArcA,-,66] [ArcA,-,68] ndhp
    [ArcA,-,-32] [ArcA,-,-27] [ArcA,-,257] sdhCp
    [ArcA,-,-72.5] [ArcA,-,-9.5] [ArcA,-,31.5] [ArcA,-,74.5] ssbp3
  [ArcA,-,-200]     cyoAp
  [ArcA,-,-179]     cadBp
  [ArcA,-,-165]     puuAp
  [ArcA,-,-108]     nuoAp2
  [ArcA,-,-111] [ArcA,-,-104]     glcDp
  [ArcA,-,-184] [ArcA,-,-173] [ArcA,-,-156]     rhaTp
      [ArcA,-,64.5] citCp1
      [ArcA,-,82] puuDp


[ArcA,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [ArcA,-,-57.0] [NarL,-,21.0,-76.0,-51.0] hybOp1
  [CRP,+,-107.5] [ArcA,-,-47.0] [IHF,+,-70.0] gltAp1
  [OmpR,-,-149.5] [CRP,+,-157.5] [PhoP,+,-191.5] [OmpR,-,-60.5] [ArcA,-,-38.0] [FadR,-,9.0,-17.0] [OmpR,-,69.5,119.5] fadLp
  [ArcA,-,-34.0] [SoxS,+,-51.5] [Rob,+,-51.5] [CRP,+,-40.5] [MarA,+,-51.5] [FNR,-,-40.5] acnAp2
  [ArcA,-,-29.0] [Fis,+,-27.0] [FadR,-,9.0] fadBp
  [ArcA,-,-29.0] arcZp
  [ArcA,-,-22.0] [FNR,-,-18.5] tpxp
  [ArcA,-,-17.0] [FadR,-,8.0] fadIp
  [FadR,-,-106.0] [ArcA,-,-7.0] [CRP,+,-59.5] [FadR,-,-20.0] fadDp
  [FNR,-,-126.5] [ArcA,-,1.5] [FNR,+,-81.5] [NarL,-,-18.5] [CRP,-,-42.5] ompWp
  [ArcA,-,15.0] [FadR,-,74.0] fadEp
  [ArcA,-,16.0] ydeAp
  [HipB,-,-132.5] [ArcA,-,19.0] [CRP,+,-61.5] [FadR,-,4.0] fadHp
  [BtsR,-,-145.0] [ArcA,-,27.0] [BtsR,-,-73.0,-49.0] [CRP,+,-60.5] mdhp1
  [ArcA,-,-74.0,-6.0] [BetI,-,-30.0] betIp
  [MqsA,-,-147.0] [ArcA,-,-64.0,24.0] [CRP,-,-62.5] [CRP,-,56.5] rpoSp
  [ArcA,-,-27.0,-18.0] [Fis,+,-29.0] [CRP,-,-18.5] lpdAp
  [LldR,-,-97.0] [LldR,+,-97.0] [ArcA,-,10.0,-18.0] [LldR,-,30.0] lldPp
  [ArcA,-,-3.0,16.0] icdAp1
  [ArcA,-,15.0,3.0] [BetI,-,-30.0] betTp
  [CRP,+,-94.5] [Fis,-,-119.0,-145.0] [ArcA,-,-48.0,-85.0,2.0] [SoxS,+,-83.5] [CRP,+,-40.5] [Fis,+,3.0,-19.0] [Mlc,-,-6.0] [Fis,-,-19.0,3.0,-80.0] ptsGp1
  [CRP,+,-99.5] [ArcA,-,-21.0,-38.0,-10.0] [SoxS,+,-44.0] [Rob,+,-40.5] [SoxR,+,9.0] [Fur,-,-36.0,-42.0,-33.0,-30.0] [IHF,-,-1.0,-68.0,-48.0,-24.0] [MarA,+,-40.5] [FNR,-,-37.5] sodAp
  [ArcA,-,-148.5,-105.5] [ArcA,-,-65.5,-2.5] [LexA,-,-28.5] uvrAp
  [ArcA,-,-139.0,-119.0,-170.0,-113.0,-143.0] [Fis,-,-171.5] [ArcA,-,-57.0,-48.0] [CRP,+,-37.5] [Fis,-,-73.5,-29.5] acnBp
  [ArcA,-,-153.5] [ArcA,-,-90.5,-50.5,-7.5] ssbp1
  [ArcA,-,-141.5] [ArcA,-,-38.5,-78.5,5.5] ssbp2
  [ArcA,-,-137.0,-157.0] [SoxS,+,-161.0] [Rob,+,-161.0] [MarA,+,-161.0] [ArcA,-,2.0,13.0,-5.0] [DnaA,-,-7.5] [CRP,+,-59.5] [FNR,-,-10.5] aldAp
  [Fis,+,-123.0] [FNR,-,-94.5] [PdhR,-,-35.0] [NsrR,-,6.0] [ArcA,-,-57.0] [Fis,+,-72.0] [IHF,-,26.0,-17.0,-58.0] [FNR,-,-50.5] [ArcA,-,57.0,52.0,68.0,36.0,66.0] [Fis,-,51.0] ndhp
  [ArcA,+,-137.0,-211.0] [ArcA,-,-32.0,-27.0] [CRP,+,-83.5] [Fur,+,-34.0] [ArcA,-,257.0] sdhCp
  [ArcA,-,-9.5,-72.5] [LexA,-,-46.5] [ArcA,-,74.5,31.5] ssbp3
  [PdhR,-,-177.0] [ArcA,-,-200.0] [CRP,+,-191.5] [Fur,-,-213.0] [Cra,-,-268.5] [FNR,-,-192.5] [CRP,+,-37.5] [HprR,-,69.5] [CusR,+,69.5] cyoAp
  [ArcA,-,-179.0] [H-NS,-,-129.0,-317.0,-260.0,-175.0] [H-NS,-,-32.0] cadBp
  [ArcA,-,-165.0] [PuuR,-,-161.5,-126.5] [PuuR,-,11.5,-84.5] [FNR,-,29.0] puuAp
  [ArcA,-,-108.0] [NarL,+,-122.0] [IHF,-,-66.0,-74.0,-83.0] [FNR,-,-40.5] nuoAp2
  [ArcA,-,-104.0,-111.0] [IHF,+,-107.0] [GlcC,+,-176.0] [PdhR,-,-56.0] glcDp
  [ArcA,-,-173.0,-156.0,-184.0] [CRP,+,-93.5] [RhaS,?,-499.0] [RhaS,+,-41.0,-74.0] rhaTp
  [DpiA,+,-108.0,-135.0,-177.0] [ArcA,-,64.5] citCp1
  [PuuR,-,-94.5] [PuuR,-,1.5] [ArcA,-,82.0] [PuuR,-,78.5,43.5] [CRP,-,63.5] puuDp

  

  

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