RegulonDB RegulonDB 10.9: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [CRP,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[CRP,-] Regulatory phrases      

[CRP,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [CRP,-,-89.5]   casAp
    [CRP,-,-86]   serCp
    [CRP,-,-84.5]   spfp
    [CRP,-,-73.5]   yaeQp
    [CRP,-,-65.5]   gltBp2
    [CRP,-,-65.5]   gltBp
    [CRP,-,-64.5]   cytRp
    [CRP,-,-63.5]   ldtBp
    [CRP,-,-63.5]   gadBp
    [CRP,-,-63.5]   gadBp2
    [CRP,-,-63]   dusBp
    [CRP,-,-62.5]   gadAp
    [CRP,-,-62.5]   gadAp2
    [CRP,-,-60.5]   metKp2
    [CRP,-,-60.5]   metKp
    [CRP,-,-58.5]   mlcp1
    [CRP,-,-53]   ompRp1
    [CRP,-,-49.5]   rplMp
    [CRP,-,-42.5]   ompWp
    [CRP,-,-36.5]   galEp2
    [CRP,-,-36.5]   bhsAp
    [CRP,-,-36]   csqRp
    [CRP,-,-35.5]   ptsHp2
    [CRP,-,-34.5]   proPp1
    [CRP,-,-32.5]   gdhAp1
    [CRP,-,-31.5]   gcdp1
    [CRP,-,-30.5]   aceBp
    [CRP,-,-25]   psiEp
    [CRP,-,-23.5]   trxAp1
    [CRP,-,-19.5]   yaePp
    [CRP,-,-19.5]   gadEp
    [CRP,-,-19.5]   metYp2
    [CRP,-,-18.5]   lpdAp
    [CRP,-,-5]   ompRp4
    [CRP,-,-2.5]   aaeRp
    [CRP,-,-2]   cyaAp
    [CRP,-,-.5]   narQp
    [CRP,-,2]   sohBp2
    [CRP,-,6.5]   ampD
    [CRP,-,11.5]   citCp2
    [CRP,-,12]   treBp
    [CRP,-,12.5]   ppiAp4
    [CRP,-,13.5]   pckp
    [CRP,-,17.5]   malIp
    [CRP,-,19.5]   sohBp1
    [CRP,-,19.5]   sohBp
    [CRP,-,20.5]   dadAp1
    [CRP,-,28.5]   xseAp
    [CRP,-,-80.5] [CRP,-,-27.5]   rpoHp4
    [CRP,-,-73.5] [CRP,-,-40.5]   tsxp2
    [CRP,-,-73.5] [CRP,-,-20.5]   rpoHp3
    [CRP,-,-61.5] [CRP,-,-27.5]   nagEp
    [CRP,-,-60.5] [CRP,-,-7.5]   ppiAp3
    [CRP,-,-57.5] [CRP,-,-55.5]   glnAp2
    [CRP,-,-48.5] [CRP,-,-18.5]   azuCp
    [CRP,-,-48] [CRP,-,4]   ycdZp4
    [CRP,-,-46.5] [CRP,-,26.5]   lacZp3
    [CRP,-,-1.5] [CRP,-,7.5]   manAp
    [CRP,-,-12.5] [CRP,-,1.5] [CRP,-,12.5]   osmYp
    [CRP,-,-12.5] [CRP,-,1.5] [CRP,-,12.5]   osmYp2
  [CRP,-,-296.5] [CRP,-,-41.5]   nirBp
  [CRP,-,-207.5] [CRP,-,-37.5]   pncBp
  [CRP,-,-104.5] [CRP,-,-70.5]   nagBp
  [CRP,-,-95.5] [CRP,-,-42.5]   ppiAp2
  [CRP,-,-94.5] [CRP,-,-41.5]   rpoHp5
  [CRP,-,-94.5] [CRP,-,-42.5]   cddp
  [CRP,-,-106] [CRP,-,-76.5] [CRP,-,-44.5]   putPp4
    [CRP,-,-62.5] [CRP,-,56.5] rpoSp
    [CRP,-,-39.5] [CRP,-,33.5] lacZp2
    [CRP,-,-92.5] [CRP,-,-40.5] [CRP,-,56.5] nupGp
  [CRP,-,-152.5]     comRp
  [CRP,-,-127]     exuRp2
  [CRP,-,-97.5]     ybiTp
  [CRP,-,-96.5]     hfqp3
  [CRP,-,-93.5]     deoCp2
  [CRP,-,-93.5]     udpP
  [CRP,-,-191.5] [CRP,-,-160.5] [CRP,-,-113.5]     csrCp
      [CRP,-,41.5] crpp1
      [CRP,-,44.5] araJp
      [CRP,-,45.5] dpiBp
      [CRP,-,50.5] plaRp
      [CRP,-,58.5] yhfAp
      [CRP,-,63.5] puuDp
      [CRP,-,64.5] sodBp


[CRP,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [LeuO,+,-110.0] [LeuO,+,21.0,-80.0] [H-NS,-,-46.0] [StpA,+,-46.0] [CRP,-,-89.5] [SlyA,+,81.5] [LeuO,+,47.0] casAp
  [Lrp,+,-134.0] [CRP,-,-86.0] serCp
  [CRP,-,-84.5] spfp
  [CRP,-,-73.5] yaeQp
  [Lrp,+,-108.0,-215.0,-152.0,-246.0] [ArgR,-,-352.0,-331.5] [GadE,+,-284.0] [IHF,+,-89.0,-85.0] [CRP,-,-65.5] [FNR,-,-26.5] gltBp2
  [Lrp,+,-108.0,-215.0,-152.0,-246.0] [ArgR,-,-352.0,-331.5] [GadE,+,-284.0] [IHF,+,-85.0,-89.0] [CRP,-,-65.5] [FNR,-,-26.5] gltBp
  [CytR,-,-59.0,-43.0,-22.0] [CRP,+,-64.5] [CRP,-,-64.5] cytRp
  [CRP,+,-63.5] [CRP,-,-63.5] ldtBp
  [GadW,-,-119.5,-210.5,-98.5,-231.5] [GadX,+,-268.0,-119.5,-231.5,-210.5,-98.5,-184.0] [Fis,-,-105.0] [GadW,+,-98.5,-210.5,-119.5,-231.5] [GadX,+,-17.5,-39.5] [GadE,+,-62.5] [Fis,-,-59.0,-27.0] [CRP,-,-63.5] [RcsB,+,-64.5] [Fis,-,37.0] gadBp
  [GadW,-,-210.5,-119.5,-231.5,-98.5] [GadX,+,-119.5,-184.0,-231.5,-210.5,-98.5,-268.0] [Fis,-,-105.0] [GadW,+,-98.5,-119.5,-210.5,-231.5] [GadX,+,-39.5,-17.5] [GadE,+,-62.5] [Fis,-,-27.0,-59.0] [CRP,-,-63.5] [RcsB,+,-64.5] [Fis,-,37.0] gadBp2
  [IHF,+,-114.0] [CRP,+,-252.5,-167.5] [Fis,-,-143.0,-101.0,-221.0] [CRP,+,-63.0] [Fis,-,-42.0,26.0,-83.0] [CRP,-,-63.0] dusBp
  [TorR,-,-122.5] [GadW,-,-121.5,-100.5] [GadX,+,-121.5,-100.5] [Fis,-,-147.0,-118.0,-94.0] [GadW,+,-100.5,-121.5] [GadRcs,+,-62.5] [GadW,-,-57.5,-78.0] [RcsB,-,-18.5] [GadX,+,-78.0,-10.5,-57.5,-31.5] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-57.5,-78.0] [FNR,-,11.5] [TorR,-,73.5] gadAp
  [TorR,-,-122.5] [GadW,-,-121.5,-100.5] [GadX,+,-100.5,-121.5] [Fis,-,-94.0,-147.0,-118.0] [GadW,+,-121.5,-100.5] [GadRcs,+,-62.5] [GadW,-,-78.0,-57.5] [RcsB,-,-18.5] [GadX,+,-31.5,-78.0,-57.5,-10.5] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-78.0,-57.5] [FNR,-,11.5] [TorR,-,73.5] gadAp2
  [CRP,-,-60.5] [MetJ-S-adenosylmethionine,-,-14.5,-2.5] metKp2
  [CRP,-,-60.5] [MetJ-S-adenosylmethionine,-,-14.5,-2.5] metKp
  [Mlc,-,16.0] [CRP,-,-58.5] mlcp1
  [IHF,-,-102.0] [IHF,-,-37.0,8.0] [CRP,-,-53.0] ompRp1
  [CRP,-,-49.5] [Fis,-,120.0] rplMp
  [FNR,-,-126.5] [ArcA,-,1.5] [FNR,+,-81.5] [NarL,-,-18.5] [CRP,-,-42.5] ompWp
  [GalS,+,-55.5] [GalR,+,-55.5] [HU,-,6.5] [GalS,-,-55.5] [CRP,-,-36.5] [GalR,-,-55.5] [GalS,-,57.5] [GalR,-,51.5] galEp2
  [CRP,-,-36.5] bhsAp
  [CRP,+,-36.0] [CRP,-,-36.0] csqRp
  [CRP,-,-35.5] [Cra,+,-48.5] ptsHp2
  [CRP,-,-34.5] proPp1
  [ArgP,+,-79.5,-59.5] [Nac,-,-25.0,-81.0] [CRP,-,-32.5] [Nac,-,45.0] gdhAp1
  [IHF,+,-73.0] [CRP,-,-31.5] gcdp1
  [IHF,+,-159.0] [IclR,-,-104.0,-122.0,-141.0,-131.0] [Cra,+,-166.5] [IHF,+,-72.0] [IclR,-,-53.0,-38.0,-26.0] [CRP,-,-30.5] aceBp
  [CRP,-,-25.0] [PhoB,+,-53.0,-31.0] psiEp
  [CRP,-,-23.5] trxAp1
  [CRP,-,-19.5] yaePp
  [GadX,+,-595.5,-574.5] [GadE,+,-198.5] [GadW,+,-574.5,-595.5] [GadE,+,-30.5,-63.5] [FliZ,-,9.5] [CRP,-,-19.5] gadEp
  [ArgR,-,-180.5,-201.5] [ArgR,-,-61.5] [CRP,-,-19.5] metYp2
  [ArcA,-,-18.0,-27.0] [Fis,+,-29.0] [CRP,-,-18.5] lpdAp
  [CRP,-,-5.0] ompRp4
  [CRP,-,-2.5] aaeRp
  [CRP,-,-2.0] cyaAp
  [CRP,-,-0.5] narQp
  [CRP,-,2.0] sohBp2
  [CRP,-,6.5] ampD
  [CRP,-,11.5] [DpiA,+,-48.0,-21.0,-90.0] [FNR,-,11.5] [NarL,-,37.0] citCp2
  [ArcA,+,-237.0] [CRP,?,-60.5] [CRP,-,12.0] [TreR,-,-81.0,-48.0] treBp
  [CytR,-,-29.0,-10.5] [CRP,-,12.5] ppiAp4
  [Cra,+,-139.5] [DcuR,+,-13.0,-64.0] [CRP,+,-90.5] [CRP,-,13.5] pckp
  [CRP,+,-43.5] [CRP,-,17.5] [MalI,-,10.5] malIp
  [CRP,-,19.5] sohBp1
  [CRP,-,19.5] sohBp
  [Lrp,-,-120.0,-225.0,-250.0,-177.0,-146.0] [CRP,+,-43.5,20.5] [Lrp,-,-7.0,-90.0,26.0,-52.0] [CRP,-,20.5] [Lrp,-,95.0,73.0] dadAp1
  [MarA,+,-42.0] [CRP,-,28.5] xseAp
  [CytR,-,-40.5,-59.0] [DnaA,-,-31.0,-55.0] [CRP,-,-80.5,-27.5] rpoHp4
  [CytR,-,-57.5,-31.5,-68.5] [CRP,+,-73.5,-40.5] [CRP,-,-40.5,-73.5] tsxp2
  [CytR,-,-52.0,-33.5] [DnaA,-,-48.0] [CRP,-,-20.5,-73.5] rpoHp3
  [NagC,-,-125.0] [NagC,-,-31.0] [CRP,+,-27.5,-61.5] [CRP,-,-27.5,-61.5] nagEp
  [CytR,-,-48.0,-29.5] [CRP,+,-60.5] [CRP,-,-60.5,-7.5] ppiAp3
  [NtrC,+,-140.0,-108.0] [NtrC,+,-45.0,-89.0,-68.0] [Fis,+,-55.0] [CRP,-,-57.5,-55.5] glnAp2
  [CRP,-,-48.5,-18.5] azuCp
  [CytR,-,-22.0] [CRP,+,-48.0,4.0] [CRP,-,-48.0,4.0] ycdZp4
  [CRP,-,-46.5,26.5] lacZp3
  [CRP,+,-64.0] [CRP,-,7.5,-1.5] manAp
  [Lrp,-,-149.0,-186.0] [IHF,-,-96.5] [IHF,-,-5.0] [Fis,-,-10.0] [CRP,-,12.5,-12.5,1.5] [Fis,-,72.0] osmYp
  [Lrp,-,-186.0,-149.0] [IHF,-,-96.5] [IHF,-,-5.0] [Fis,-,-10.0] [CRP,-,12.5,1.5,-12.5] [Fis,-,72.0] osmYp2
  [IHF,+,-115.0] [Fis,-,-97.0,-142.0] [CRP,-,-296.5] [NarP,+,-74.0,-65.0] [NarL,+,-65.0,-74.0] [FNR,+,-41.5] [Cra,-,-15.5] [IHF,-,-88.0] [Fis,-,23.0] [CRP,-,-41.5] nirBp
  [CRP,-,-207.5] [CRP,-,-37.5] [NadR,-,20.5] pncBp
  [NagC,-,-101.0] [CRP,+,-104.5] [CRP,-,-104.5] [NagC,-,-7.0] [CRP,+,-70.5] [CRP,-,-70.5] nagBp
  [CRP,-,-95.5] [CytR,-,-64.5,-83.0] [CRP,+,-42.5] [CRP,-,-42.5] ppiAp2
  [CRP,+,-94.5] [CRP,-,-94.5] [CytR,-,-54.5,-73.5] [CRP,+,-48.5,-41.5] [CRP,-,-41.5] rpoHp5
  [CRP,-,-94.5] [CytR,-,-64.0,-82.5] [NsrR,-,9.0] [CRP,+,-42.5,-92.5] [CRP,-,-42.5] cddp
  [CRP,-,-106.0] [CRP,-,-76.5,-44.5] putPp4
  [MqsA,-,-147.0] [ArcA,-,24.0,-64.0] [CRP,-,-62.5] [CRP,-,56.5] rpoSp
  [CRP,-,-39.5] [CRP,-,33.5] lacZp2
  [CytR,-,-76.5,-53.0,-61.0] [CRP,+,-42.5,-92.5] [CRP,-,-92.5,-40.5] [CRP,+,56.5] [CRP,-,56.5] nupGp
  [CRP,-,-152.5] comRp
  [UxuR,-,-193.5] [ExuR,-,-193.5] [CRP,-,-127.0] [ExuR,-,-4.5] exuRp2
  [CRP,+,-97.5] [AscG,-,-108.5] [CRP,-,-97.5] ybiTp
  [CRP,-,-96.5] hfqp3
  [CRP,+,-93.5] [Fis,+,-102.0] [DeoR,-,-308.0,-887.0] [CRP,-,-93.5] [CytR,-,-70.5,-87.5,-61.0] [CRP,+,-40.5] [DeoR,-,-8.0] [ModE,-,-35.0] deoCp2
  [CRP,+,-93.5] [CRP,-,-93.5] [CytR,-,-70.5,-87.0,-61.0] [CRP,+,-41.5] udpP
  [UvrY,+,-159.0] [CRP,-,-113.5,-191.5,-160.5] csrCp
  [CRP,+,-59.5] [Fis,-,-92.0] [Cra,+,-45.5] [Fis,-,49.0,31.0,69.0] [CRP,-,41.5] crpp1
  [CRP,+,-90.5] [AraC,+,-43.0,-64.0] [CRP,-,44.5] araJp
  [ArcA,+,-95.5] [NarL,-,20.0] [CRP,-,45.5] [DpiA,+,146.0,77.0,104.0] [FNR,-,45.5] dpiBp
  [IHF,-,-4.0] [YiaJ,-,-55.0] [CRP,-,50.5] plaRp
  [CRP,+,-42.5] [CRP,-,58.5] yhfAp
  [PuuR,-,-94.5] [PuuR,-,1.5] [ArcA,-,82.0] [PuuR,-,78.5,43.5] [CRP,-,63.5] puuDp
  [NsrR,-,-37.0] [IHF,-,-61.0] [CRP,-,64.5] sodBp

  

  

RegulonDB