RegulonDB RegulonDB 10.9: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [Fis,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[Fis,+] Regulatory phrases      

[Fis,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [Fis,+,-81]   marRp
    [Fis,+,-76]   aspVp
    [Fis,+,-76]   proKp
    [Fis,+,-76]   alaWp
    [Fis,+,-75]   metYp1
    [Fis,+,-75]   pheVp
    [Fis,+,-75]   leuXp
    [Fis,+,-75]   serXp
    [Fis,+,-75]   argXp
    [Fis,+,-74]   lysTp
    [Fis,+,-74]   argWp
    [Fis,+,-74]   pheUp
    [Fis,+,-73]   leuQp
    [Fis,+,-72]   flxAp
    [Fis,+,-67]   metTp
    [Fis,+,-67]   glyUp
    [Fis,+,-66]   proLp
    [Fis,+,-66]   thrWp
    [Fis,+,-65]   argUp
    [Fis,+,-60]   serTp
    [Fis,+,-58]   queAp
    [Fis,+,-55]   glnAp2
    [Fis,+,-53.5]   mazEp2
    [Fis,+,-47]   trmAp
    [Fis,+,-40.5]   mazEp1
    [Fis,+,-29]   lpdAp
    [Fis,+,-27]   fadBp
    [Fis,+,-81] [Fis,+,-41]   proPp2
    [Fis,+,-19] [Fis,+,3]   ptsGp1
  [Fis,+,-149] [Fis,+,-60]   trgp1
  [Fis,+,-123] [Fis,+,-72]   ndhp
  [Fis,+,-159] [Fis,+,-117] [Fis,+,-10]   grcAp1
  [Fis,+,-156] [Fis,+,-103] [Fis,+,-81]   carAp1
  [Fis,+,-156] [Fis,+,-118] [Fis,+,-50]   rnpBp
  [Fis,+,-143] [Fis,+,-102] [Fis,+,-71]   rrsBp1
  [Fis,+,-143] [Fis,+,-102] [Fis,+,-71]   rrsBp
  [Fis,+,-129] [Fis,+,-98] [Fis,+,-78]   tyrTp
  [Fis,+,-121] [Fis,+,-101] [Fis,+,-70]   rrsCp
  [Fis,+,-121] [Fis,+,-101] [Fis,+,-70]   rrsCp1
  [Fis,+,-114] [Fis,+,-93] [Fis,+,-73]   valUp
  [Fis,+,-170] [Fis,+,-143] [Fis,+,-117] [Fis,+,-101] [Fis,+,-72]   rrsEp3
  [Fis,+,-170] [Fis,+,-143] [Fis,+,-117] [Fis,+,-101] [Fis,+,-72]   rrsEp
  [Fis,+,-256] [Fis,+,-230] [Fis,+,-199] [Fis,+,-178] [Fis,+,-157] [Fis,+,-129] [Fis,+,-94] [Fis,+,-62]   topAp1
  [Fis,+,-148] [Fis,+,-68] [Fis,+,-42]   adhEp1
  [Fis,+,-148] [Fis,+,-68] [Fis,+,-42]   adhEp
  [Fis,+,-123] [Fis,+,-91] [Fis,+,-71]   thrUp
  [Fis,+,-112] [Fis,+,-91] [Fis,+,-71]   rrsGp1
  [Fis,+,-112] [Fis,+,-91] [Fis,+,-71]   rrsGp
  [Fis,+,-181] [Fis,+,-134] [Fis,+,-91] [Fis,+,-71]   rrsHp1
  [Fis,+,-181] [Fis,+,-134] [Fis,+,-91] [Fis,+,-71]   rrsHp
  [Fis,+,-133] [Fis,+,-111] [Fis,+,-91] [Fis,+,-71]   rrsAp1
  [Fis,+,-133] [Fis,+,-111] [Fis,+,-91] [Fis,+,-71]   rrsAp
  [Fis,+,-174] [Fis,+,-144] [Fis,+,-126] [Fis,+,-91] [Fis,+,-71]   rrsDp
  [Fis,+,-174] [Fis,+,-144] [Fis,+,-126] [Fis,+,-91] [Fis,+,-71]   rrsDp1
  [Fis,+,-282] [Fis,+,-243] [Fis,+,-174] [Fis,+,-118] [Fis,+,-71] [Fis,+,-10] [Fis,+,25]   hnsp
  [Fis,+,-126] [Fis,+,-72] [Fis,+,12] [Fis,+,87] [Fis,+,119] cspAp1
  [Fis,+,-180] [Fis,+,-116] [Fis,+,-68] [Fis,+,-61] [Fis,+,-19] [Fis,+,35] glpABCp
  [Fis,+,-166] [Fis,+,-113] [Fis,+,-71] [Fis,+,-64] [Fis,+,-16] [Fis,+,49] glpTQp
  [Fis,+,-102]     deoCp2
  [Fis,+,-235.5] [Fis,+,-198.5] [Fis,+,-138.5]     nuoAp1
  [Fis,+,-255] [Fis,+,-219.5] [Fis,+,-167.5] [Fis,+,-93.5]     hupAp
  [Fis,+,-323] [Fis,+,-269] [Fis,+,-199] [Fis,+,-156] [Fis,+,-128]     nrdAp
  [Fis,+,-116]   [Fis,+,52] malEp


[Fis,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [SoxS,+,-61.5] [Rob,+,-61.5] [CRP,+,-52.5] [Fis,+,-81.0] [Cra,-,-72.5] [AcrR,-,-40.5] [CpxR,+,-29.0] [MarR,-,17.0,-18.0] [MarA,+,-61.5] marRp
  [Fis,+,-76.0] aspVp
  [Fis,+,-76.0] proKp
  [Fis,+,-76.0] alaWp
  [Fis,+,-75.0] metYp1
  [Fis,+,-75.0] pheVp
  [Fis,+,-75.0] leuXp
  [Fis,+,-75.0] serXp
  [Fis,+,-75.0] argXp
  [Fis,+,-74.0] lysTp
  [Fis,+,-74.0] argWp
  [Fis,+,-74.0] pheUp
  [Fis,+,-73.0] leuQp
  [Fis,+,-72.0] flxAp
  [Fis,+,-67.0] metTp
  [Fis,+,-67.0] glyUp
  [Fis,+,-66.0] proLp
  [Fis,+,-66.0] thrWp
  [Fis,+,-65.0] argUp
  [Fis,+,-60.0] serTp
  [Fis,+,-58.0] queAp
  [NtrC,+,-108.0,-140.0] [NtrC,+,-68.0,-45.0,-89.0] [Fis,+,-55.0] [CRP,-,-55.5,-57.5] glnAp2
  [MazE,-,-20.0,-34.0] [Fis,+,-53.5] [MazEF,-,-20.0,-34.0] mazEp2
  [Fis,+,-47.0] trmAp
  [MazE,-,-21.0,-7.0] [Fis,+,-40.5] [MazEF,-,-21.0,-7.0] mazEp1
  [ArcA,-,-27.0,-18.0] [Fis,+,-29.0] [CRP,-,-18.5] lpdAp
  [ArcA,-,-29.0] [Fis,+,-27.0] [FadR,-,9.0] fadBp
  [CRP,+,-122.5] [Fis,+,-81.0,-41.0] proPp2
  [CRP,+,-94.5] [Fis,-,-119.0,-145.0] [ArcA,-,-48.0,-85.0,2.0] [SoxS,+,-83.5] [CRP,+,-40.5] [Fis,+,3.0,-19.0] [Mlc,-,-6.0] [Fis,-,-19.0,3.0,-80.0] ptsGp1
  [Fis,+,-149.0] [CRP,+,-52.5] [Fis,+,-60.0] trgp1
  [Fis,+,-123.0] [FNR,-,-94.5] [PdhR,-,-35.0] [NsrR,-,6.0] [ArcA,-,-57.0] [Fis,+,-72.0] [IHF,-,26.0,-17.0,-58.0] [FNR,-,-50.5] [ArcA,-,57.0,52.0,68.0,36.0,66.0] [Fis,-,51.0] ndhp
  [Fis,+,-159.0,-117.0] [ArcA,+,-99.0] [FNR,-,-93.5] [PdhR,-,17.0] [CRP,+,-40.5] [Fis,+,-10.0] [FNR,+,-40.5] [ArcA,+,-82.0] [FNR,-,-40.5] grcAp1
  [PurR,-,-128.5] [IHF,+,-305.0] [RutR,+,-184.0] [Fis,+,-156.0,-103.0] [PepA,-,-173.0] [IHF,-,-305.0] [Fis,+,-81.0] [PepA,-,-79.0] carAp1
  [Fis,+,-118.0,-156.0] [Fis,+,-50.0] [Fis,-,11.0] rnpBp
  [Fis,+,-102.0,-143.0] [H-NS,-,-83.0,-26.0,-50.0] [Fis,+,-71.0] [Lrp,-,-53.0] [Lrp,-,75.0,269.0] rrsBp1
  [Fis,+,-102.0,-143.0] [H-NS,-,-83.0,-26.0,-50.0] [Fis,+,-71.0] [Lrp,-,-53.0] [Lrp,-,269.0,75.0] rrsBp
  [Fis,+,-98.0,-129.0] [Fis,+,-78.0] tyrTp
  [Fis,+,-101.0,-121.0] [Fis,+,-70.0] rrsCp
  [Fis,+,-101.0,-121.0] [Fis,+,-70.0] rrsCp1
  [Fis,+,-93.0,-114.0] [Fis,+,-73.0] valUp
  [Fis,+,-117.0,-101.0,-170.0,-143.0] [Fis,+,-72.0] rrsEp3
  [Fis,+,-101.0,-143.0,-170.0,-117.0] [Fis,+,-72.0] rrsEp
  [Fis,+,-230.0,-199.0,-129.0,-256.0,-178.0,-94.0,-157.0] [Fis,+,-62.0] [Fis,-,-30.0,-10.0,20.0] topAp1
  [Fis,+,-148.0] [Lrp,-,-157.0] [Fis,+,-68.0,-42.0] [Lrp,-,-65.0,-6.0] [Cra,-,36.5] [NarL,-,90.0,81.0] adhEp1
  [Fis,+,-148.0] [Lrp,-,-157.0] [Fis,+,-42.0,-68.0] [Lrp,-,-65.0,-6.0] [Cra,-,36.5] [NarL,-,81.0,90.0] adhEp
  [Fis,+,-123.0] [Fis,+,-91.0,-71.0] thrUp
  [Fis,+,-112.0] [Fis,+,-91.0,-71.0] rrsGp1
  [Fis,+,-112.0] [Fis,+,-91.0,-71.0] rrsGp
  [Fis,+,-181.0,-134.0] [Fis,+,-71.0,-91.0] rrsHp1
  [Fis,+,-134.0,-181.0] [Fis,+,-91.0,-71.0] rrsHp
  [Fis,+,-133.0,-111.0] [Fis,+,-71.0,-91.0] [Lrp,-,-53.0,-73.0] rrsAp1
  [Fis,+,-111.0,-133.0] [Fis,+,-91.0,-71.0] [Lrp,-,-73.0,-53.0] rrsAp
  [Fis,+,-174.0,-126.0,-144.0] [Fis,+,-71.0,-91.0] rrsDp
  [Fis,+,-174.0,-126.0,-144.0] [Fis,+,-91.0,-71.0] rrsDp1
  [H-NS,-,-113.0,-182.0] [Fis,+,-282.0,-243.0,-174.0,-118.0] [H-NS,-,-40.0] [Fis,+,-10.0,25.0,-71.0] hnsp
  [H-NS,-,-143.5,-105.5] [Fis,+,-126.0] [H-NS,-,23.5,-9.5,-58.0] [Fis,+,12.0,-72.0] [Fis,+,87.0,119.0] cspAp1
  [Fis,+,-116.0,-180.0] [CRP,+,-90.5,-40.5,-0.5] [Fis,+,-61.0,-68.0,-19.0] [FNR,+,-0.5,-40.5] [GlpR,-,-18.5,-50.5,1.5,-90.5] [Fis,+,35.0] [GlpR,-,41.5] glpABCp
  [CRP,+,-131.5] [Fis,+,-113.0,-166.0] [FNR,+,-131.5] [GlpR,-,-113.5,-132.5,-172.5] [CRP,+,-41.5,-91.5] [Fis,+,-64.0,-16.0,-71.0] [FNR,+,-91.5] [GlpR,-,-81.5,-41.5] [Fis,+,49.0] [GlpR,-,315.5,348.5,333.5] [IHF,-,35.0,202.0] glpTQp
  [CRP,+,-93.5] [Fis,+,-102.0] [DeoR,-,-887.0,-308.0] [CRP,-,-93.5] [CytR,-,-61.0,-87.5,-70.5] [CRP,+,-40.5] [DeoR,-,-8.0] [ModE,-,-35.0] deoCp2
  [Fis,+,-138.5,-198.5,-235.5] nuoAp1
  [Fis,+,-255.0,-219.5,-93.5,-167.5] [CRP,+,-63.5] hupAp
  [H-NS,-,-439.0,-415.0] [CRP,+,-136.5] [Fis,+,-323.0,-128.0,-199.0,-156.0,-269.0] [ArgP,+,-163.5,-334.5,-218.5,-244.5,-281.5,-190.5] [DnaA,-,-14.0] [DnaA,+,-48.0,-36.5] [NrdR,-,25.5,-7.5] nrdAp
  [MalT,+,-231.5,-197.5,-207.5] [CRP,+,-139.5,-105.5,-171.5] [Fis,+,-116.0] [MalT,+,-41.5,-51.5] [CRP,+,-76.5] [CreB,-,18.5] [Fis,+,52.0] malEp

  

  

RegulonDB