RegulonDB RegulonDB 11.1: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [GadX,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[GadX,+] Regulatory phrases      

[GadX,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [GadX,+,11.5]   glsAp
    [GadX,+,-50.5] [GadX,+,-29.5]   gadYp
    [GadX,+,-50.5] [GadX,+,-29.5]   gadEp3
    [GadX,+,-81.5] [GadX,+,-70.5] [GadX,+,-60.5] [GadX,+,-3] [GadX,+,17]   slpp
  [GadX,+,-126.5] [GadX,+,-74.5] [GadX,+,-53.5]   hdeAp
  [GadX,+,-126.5] [GadX,+,-74.5] [GadX,+,-53.5]   hdeAp2
  [GadX,+,-268] [GadX,+,-231.5] [GadX,+,-210.5] [GadX,+,-184] [GadX,+,-119.5] [GadX,+,-98.5] [GadX,+,-39.5] [GadX,+,-17.5]   gadBp2
  [GadX,+,-268] [GadX,+,-231.5] [GadX,+,-210.5] [GadX,+,-184] [GadX,+,-119.5] [GadX,+,-98.5] [GadX,+,-39.5] [GadX,+,-17.5]   gadBp
  [GadX,+,-121.5] [GadX,+,-100.5] [GadX,+,-78] [GadX,+,-57.5] [GadX,+,-31.5] [GadX,+,-10.5]   gadAp
  [GadX,+,-121.5] [GadX,+,-100.5] [GadX,+,-78] [GadX,+,-57.5] [GadX,+,-31.5] [GadX,+,-10.5]   gadAp2
  [GadX,+,-595.5] [GadX,+,-574.5]     gadEp2
  [GadX,+,-115.5] [GadX,+,-94.5]     hdeDp2
  [GadX,+,-115.5] [GadX,+,-94.5]     hdeDp


[GadX,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [GadX,+,11.5] glsAp
  [GadX,+,-50.5,-29.5] [GadW,-,-29.5,-50.5] gadYp
  [GadX,+,-29.5,-50.5] [YdeO,+,-41.0] gadEp3
  [GadX,+,17.0,-60.5,-81.5,-70.5,-3.0] [YdeO,+,-40.0] [GadW,-,-60.5,-81.5] [MarA,-,39.0] slpp
  [GadX,+,-126.5] [GadE,+,-117.5] [GadX,-,-126.5] [Lrp,-,-97.0,-116.0,-159.0] [H-NS,-,-118.0] [GadW,-,-126.5] [GadW,+,-126.5] [GadX,+,-74.5,-53.5] [GadE,+,9.5] [TorR,+,-51.5,-27.5] [GadX,-,-74.5,-53.5] [Lrp,-,-55.0,-18.0,-64.0] [FliZ,-,8.0] [GadW,-,-74.5,-53.5] [GadW,+,-74.5,-53.5] [MarA,-,-39.0] [PhoP,+,-32.0] hdeAp
  [GadX,+,-126.5] [GadE,+,-117.5] [GadX,-,-126.5] [Lrp,-,-116.0,-97.0,-159.0] [H-NS,-,-118.0] [GadW,-,-126.5] [GadW,+,-126.5] [GadX,+,-74.5,-53.5] [GadE,+,9.5] [TorR,+,-51.5,-27.5] [GadX,-,-74.5,-53.5] [Lrp,-,-64.0,-55.0,-18.0] [FliZ,-,8.0] [GadW,-,-53.5,-74.5] [GadW,+,-53.5,-74.5] [MarA,-,-39.0] [PhoP,+,-32.0] hdeAp2
  [GadX,+,-98.5,-119.5,-184.0,-268.0,-231.5,-210.5] [GadW,-,-210.5,-231.5,-98.5,-119.5] [Fis,-,-105.0] [GadW,+,-231.5,-119.5,-210.5,-98.5] [GadX,+,-17.5,-39.5] [GadE,+,-62.5] [Fis,-,-59.0,-27.0] [CRP,-,-63.5] [RcsB,+,-64.5] [Fis,-,37.0] gadBp2
  [GadX,+,-268.0,-231.5,-119.5,-98.5,-210.5,-184.0] [GadW,-,-210.5,-98.5,-231.5,-119.5] [Fis,-,-105.0] [GadW,+,-98.5,-210.5,-119.5,-231.5] [GadX,+,-39.5,-17.5] [GadE,+,-62.5] [Fis,-,-27.0,-59.0] [CRP,-,-63.5] [RcsB,+,-64.5] [Fis,-,37.0] gadBp
  [GadX,+,-100.5,-121.5] [TorR,-,-122.5] [GadW,-,-121.5,-100.5] [Fis,-,-147.0,-94.0,-118.0] [GadW,+,-100.5,-121.5] [GadX,+,-10.5,-78.0,-57.5,-31.5] [GadW,-,-57.5,-78.0] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-78.0,-57.5] [RcsB,-,-18.5] [FNR,-,11.5] [GadE-RcsB,+,-62.5] [TorR,-,73.5] gadAp
  [GadX,+,-121.5,-100.5] [TorR,-,-122.5] [GadW,-,-100.5,-121.5] [Fis,-,-118.0,-94.0,-147.0] [GadW,+,-100.5,-121.5] [GadX,+,-57.5,-78.0,-31.5,-10.5] [GadW,-,-57.5,-78.0] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-78.0,-57.5] [RcsB,-,-18.5] [FNR,-,11.5] [GadE-RcsB,+,-62.5] [TorR,-,73.5] gadAp2
  [GadX,+,-595.5,-574.5] [GadE,+,-198.5] [GadW,+,-595.5,-574.5] [GadE,+,-63.5,-30.5] [FliZ,-,9.5] [CRP,-,-19.5] gadEp2
  [GadX,+,-115.5,-94.5] [PhoP,+,-137.0] [GadE,+,-51.5] hdeDp2
  [GadX,+,-115.5,-94.5] [PhoP,+,-137.0] [GadE,+,-51.5] hdeDp

  

  

RegulonDB