RegulonDB

Regulon
Regulated gene(s)	aceE, aceF, ackA, acnA, acrE, acrF, adhE, aer, aldA, amtB, ansB, arcA, aspA, aspC, bcsB, bcsZ, cadC, caiA, caiB, caiC, caiD, caiE, caiF, caiT, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH, ccp, cheB, cheR, cheY, cheZ, citC, citD, citE, citF, citG, citX, cydA, cydB, cydC, cydD, cyoA, cyoB, cyoC, cyoD, cyoE, cysG, dcuA, dcuB, dcuC, dcuR, dcuS, dmsA, dmsB, dmsC, dmsD, dpiA, dpiB, dppA, dppC, dppD, dppF, emrK, emrY, entF, fdhF, fdnG, fdnH, fdnI, feoA, feoB, feoC, fepE, fes, fhlA, fixA, fixB, fixC, fixX, fnr, fnrS, focA, focB, frdA, frdB, frdC, frdD, fumA, fumB, fumC, gadA, gadW, gadX, garK, garL, garP, garR, gcvH, gcvP, gcvT, gdhA, glnD, glnK, glpA, glpB, glpC, glpQ, glpT, gltB, gltD, gltF, gnd, grcA, hcp, hcr, hemA, hlyE, hmp, hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, hypB, hypC, hypD, hypE, idlP, iraD, iraM, katG, lpd, malP, malQ, moaA, moaB, moaC, moaD, moaE, moeA, moeB, nac, napA, napB, napC, napD, napF, napG, napH, narG, narH, narI, narJ, narK, narL, narS, narX, ndh, nfeR, nikA, nikB, nikC, nikD, nikE, nikR, nirB, nirC, nirD, norV, norW, nrdD, nrdG, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, ompW, ompX, pdeF, pdhR, pepT, pflB, pheM, phoU, pitA, poxB, prfA, prmC, pstA, pstB, pstC, pstS, purM, purN, puuA, puuP, ravA, rimM, rnpB, rplB, rplC, rplD, rplM, rplP, rplS, rplT, rplV, rplW, rpmC, rpsC, rpsI, rpsJ, rpsP, rpsQ, rpsS, sdhA, sdhB, sdhC, sdhD, sdhX, sodA, soxR, soxS, ssuA, ssuB, ssuC, ssuD, ssuE, sucA, sucB, sucC, sucD, tap, tar, tdcA, tdcB, tdcC, tdcD, tdcE, tdcF, tdcG, tpx, trmD, ubiA, ubiC, upp, uraA, uxaA, uxaC, viaA, xdhA, xdhB, xdhC, ybdN, ybdZ, ychO, ydeJ, ydhT, ydhU, ydhV, ydhW, ydhX, ydhY, yecR, yeiL, ygbA, ymjE, ynfE, ynfF, ynfG, ynfH, ysgA, ytfE, zwf Read more >
Multifun term(s) of regulated gene(s)	MultiFun Term (List of genes associated to the multifun term) membrane (79) acrF, aer, amtB, caiT, ccmB, ccmC, ccmD, ccmF, ccmG, ccmH, cydA, cydB, cydC, cydD, cyoA, cyoB, cyoC, cyoD, cyoE, dcuA, dcuB, dcuC, dmsA, dmsB, dmsC, dpiB, dppB, dppC, emrY, entF, fdnH, fdnI, feoB, fepE, focA, focB, frdC, frdD, garP, glpA, glpB, glpC, glpT, hyfB, hyfC, hyfD, hyfE, hyfF, narI, narK, narX, nikB, nikC, nirC, nrfC, nrfD, nrfE, nuoA, nuoH, nuoJ, nuoK, nuoL, nuoM, nuoN, pitA, poxB, pstA, pstC, puuP, sdhA, sdhB, sdhC, sdhD, ssuC, tap, tar, tdcC, ubiA, uraA anaerobic respiration (65) dcuR, dcuS, dmsA, dmsB, dmsC, fdnG, fdnH, fdnI, fnr, frdA, frdB, frdC, frdD, glpA, glpB, glpC, glpT, grcA, hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfR, hypC, hypD, hypE, napA, napB, napC, napF, napG, napH, narG, narH, narI, narJ, narL, narX, nikD, nikE, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN aerobic respiration (27) cyoA, cyoB, cyoC, cyoD, cyoE, glpT, ndh, nikD, nikE, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, sdhA, sdhB, sdhC, sdhD, ubiA electron donors (26) fdhF, fdnG, fdnH, fdnI, glpA, glpB, glpC, ndh, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, poxB, sdhA, sdhB, sdhC, sdhD electron acceptors (24) caiA, cydA, cydB, cyoA, cyoB, cyoC, cyoD, dmsA, dmsB, dmsC, dmsD, frdA, frdB, frdC, frdD, napA, napB, napC, narG, narH, narI, nrfA, nrfB, nrfC carbon compounds (21) aceE, aceF, ackA, aldA, caiT, dcuA, dcuB, dcuC, focA, garK, garL, garP, garR, gnd, lpd, malP, malQ, poxB, uxaA, uxaC, zwf Transcription related (19) arcA, cadC, caiF, dcuR, dpiA, fhlA, fnr, gadW, gadX, hyfR, nac, narL, nfeR, nikR, pdhR, soxR, soxS, tdcA, yeiL cytochromes (19) ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH, fdnI, napB, napC, narI, nrfA, nrfB, nrfE, nrfF, nrfG, sdhC, sdhD Porters (Uni-, Sym- and Antiporters) (17) acrF, amtB, caiT, dcuA, dcuB, dcuC, emrY, focA, focB, garP, glpT, narK, nirC, pitA, puuP, tdcC, uraA translation (17) prfA, rplB, rplC, rplD, rplM, rplP, rplS, rplT, rplV, rplW, rpmC, rpsC, rpsI, rpsJ, rpsP, rpsQ, rpsS ribosomal proteins (17) rimM, rplB, rplC, rplD, rplM, rplP, rplS, rplT, rplV, rplW, rpmC, rpsC, rpsI, rpsJ, rpsP, rpsQ, rpsS ribosomes (17) rimM, rplB, rplC, rplD, rplM, rplP, rplS, rplT, rplV, rplW, rpmC, rpsC, rpsI, rpsJ, rpsP, rpsQ, rpsS activator (16) arcA, cadC, caiF, dcuR, dpiA, fhlA, fnr, gadX, hyfR, nac, narL, pdhR, soxR, soxS, tdcA, yeiL Oxidoreduction-driven Active Transporters (16) cyoA, cyoB, cyoC, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN amino acids (15) ackA, ansB, aspC, cadC, dppA, dppD, dppF, gcvH, gcvP, gcvT, lpd, tdcA, tdcB, tdcE, tdcG operon (14) arcA, cadC, caiF, dpiA, fhlA, gltF, hyfR, nac, narL, nikR, pdhR, rplD, soxR, tdcA posttranslational modification (14) cheB, cheR, cheZ, citC, citG, citX, dcuS, dpiB, glnD, hypD, hypE, narX, nrdG, prmC chaperoning, repair (refolding) (13) ccmD, ccmE, ccmG, ccmH, dppA, hypB, hypC, napD, narJ, nrfE, nrfF, nrfG, ytfE TCA cycle (12) acnA, fumA, fumB, fumC, sdhA, sdhB, sdhC, sdhD, sucA, sucB, sucC, sucD fermentation (12) adhE, fdhF, fhlA, frdA, frdB, frdC, frdD, fumB, fumC, hypB, pflB, tdcE nitrogen metabolism (10) glnD, glnK, gltB, gltD, hcp, nac, narK, nirB, nirC, nirD repressor (9) arcA, fnr, gadW, nac, narL, nikR, pdhR, soxR, soxS phosphorous metabolism (8) phoU, pitA, pstA, pstB, pstC, pstS, ssuA, ssuC motility, chemotaxis, energytaxis (aerotaxis, redoxtaxis etc) (7) aer, cheB, cheR, cheY, cheZ, tap, tar two component regulatory systems (external signal) (7) arcA, dcuR, dcuS, dpiA, dpiB, narL, narX ABC superfamily, membrane component (7) dppB, dppC, nikB, nikC, pstA, pstC, ssuC molybdenum (7) moaA, moaB, moaC, moaD, moaE, moeA, moeB other (mechanical, nutritional, oxidative stress) (6) acnA, arcA, grcA, iraD, soxR, soxS carnitine metabolism (6) caiA, caiB, caiD, caiE, fixC, fixX ABC superfamily ATP binding cytoplasmic component (6) dppD, dppF, nikD, nikE, pstB, ssuB Fe aquisition (6) entF, feoA, feoB, fepE, fes, ybdZ detoxification (6) katG, norW, sodA, soxR, soxS, tpx posttranscriptional (5) acnA, iraD, iraM, rplT, viaA unassigned reversible reactions (5) caiF, citD, citE, citF, hmp misc. glycerol metabolism (5) glpA, glpB, glpC, glpQ, glpT threonine catabolism (4) ackA, tdcB, tdcD, tdcE unknown (4) aer, glnK, phoU, ravA amines (4) caiC, caiE, caiF, puuA ABC superfamily, periplasmic binding component (4) dppA, nikA, pstS, ssuA formyl-THF biosynthesis (4) gcvH, gcvP, gcvT, lpd electron carriers (4) napG, napH, norV, norW metabolism of other compounds (4) ynfE, ynfF, ynfG, ynfH pyruvate dehydrogenase (3) aceE, aceF, lpd drug resistance/sensitivity (3) acrF, emrK, emrY polysaccharides (3) bcsZ, malP, malQ energy production/transport (3) ccp, fixA, fixB covalent modification, demodification, maturation (3) citC, dcuS, narX antisense RNA (3) fnrS, fnrS, sdhX glutamate (3) gdhA, gltB, gltD transcriptional level (3) nfeR, rplD, rpsJ inhibition / activation of enzymes (3) nrdG, tap, tar sulfur metabolism (3) ssuB, ssuD, ssuE nucleotides (3) xdhA, xdhB, xdhC glyoxylate degradation (2) aceE, aceF pyruvate oxidation (2) ackA, poxB ABC superfamily, ATP binding and membrane component (2) cydC, cydD heme, porphyrine (2) cysG, hemA Transporters of Unknown Classification (2) feoA, feoB transport (2) feoC, fepE pH (2) gadA, grcA pentose pwy, oxidative branch (2) gnd, zwf starvation (2) iraM, ssuE purine biosynthesis (2) purM, purN RNA modification (2) rnpB, trmD menaquinone, ubiquinone (2) ubiA, ubiC acetate catabolism (1) ackA methylglyoxal metabolism (1) aldA asparagine (1) aspA lysine (1) aspA amino acid conversion (1) aspA aspartate (1) aspC biosynthesis of macromolecules (cellular constituents) (1) bcsB acyl carrier protein (1) citD Putative uncharacterized transport protein (1) emrK enterochelin (enterobactin) (1) entF Coenzyme A and its modification (1) entF Non-ribosomal peptide synthetase (1) entF incorporation of metal ions (1) fes global (1) fnr glutamine (1) glnD fatty acids and phosphatidic acid (1) glpT metabolism (1) hcr cell killing (1) hlyE export, signal peptide cleavage (1) napD 2'-deoxyribonucleotide metabolism (1) nrdD Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily) (1) ompW prophage genes and phage related functions (1) ompX adaptations (1) pdeF glycolysis (1) pdhR proteins/peptides/glycopeptides (1) pepT turnover, degradation (1) pepT amino acid -activation (1) pheM RNA (1) rnpB RNA degradation (1) rnpB translation attenuation and efficiency (1) rplD regulon (1) soxS threonine (1) tdcC nucleotide and nucleoside conversions (1) upp Read more >
Regulated operon(s)	ackA-pta, acrEF, adhE, aer, aldA, ansB, arcA, aspA-dcuA, aspC, bcsABZC, cadC, caiF, caiTABCDE, ccp, citCDEFXG, cydAB, cydDC, cyoABCDE, dcuB-fumB, dcuC, dcuSR, dmsABC, dpiBA, dppABCDF, emrKY, fdhF, fdnGHI, feoABC, fes-ybdZ-entF-fepE, fixABCX, fnr, fnrS, focA-pflB, frdABCD, fumAC, gadAXW, garPLRK-rnpB, gcvTHP, gdhA, glnK-amtB, glpABC, glpTQ, gltBDF, gnd, grcA, hcp-hcr-poxB-ltaE-ybjT, hemA-prfA-prmC, hlyE, hmp, hyfABCDEFGHIJR-focB, hypABCDE-fhlA, iraM, katG, malPQ, map-glnD-dapD, moaABCDE, moeAB, nac, napFDAGHBC-ccmABCDEFGH, narGHJI, narKS, narXL, ndh, nfeR, nikABCDER, norVW, nrdDG, nrfABCDEFG, nuoABCEFGHIJKLMN, ompW, pdeF, pdhR-aceEF-lpd, pepT, pitA, pstSCAB-phoU, purMN, puuA-ymjE-puuP, ravA-viaA, rplM-rpsI, rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ, rpsP-rimM-trmD-rplS, sdhCDAB-sucABCD-sdhX, sodA, soxR, soxS, ssuEADCB, tar-tap-cheRBYZ, tdcABCDEFG, thrS-infC-rpmI-rplT-pheMST-ihfA, tpx, ubiCA, upp-uraA, uxaCA, xdhABC, ybdN, ychO, ydeJ, ydhYVWXUT, yecR, yeiL, ygbA, yliM-ompX, ymiC-acnA, ynfEFGH-dmsD, ysgA, ytfE, ytiCD-idlP-iraD, zwf Read more >
First gene in the operon(s)	aceE, ackA, acnA, acrE, adhE, aer, aldA, ansB, arcA, aspA, aspC, bcsB, cadC, caiF, caiT, citC, cydA, cydD, cyoA, dcuB, dcuC, dcuS, dmsA, dpiB, dppA, emrK, fdhF, fdnG, feoA, fes, fixA, fnr, fnrS, focA, frdA, fumA, fumB, fumC, gadA, gadX, garP, gcvT, gdhA, glnD, glnK, glpA, glpT, gltB, gnd, grcA, hcp, hemA, hlyE, hmp, hyfA, hypB, idlP, iraM, katG, lpd, malP, moaA, moeA, nac, napF, narK, narX, ndh, nfeR, nikA, nirB, norV, nrdD, nrfA, nuoA, ompW, ompX, pdhR, pepT, pitA, pstS, purM, puuA, ravA, rplM, rplT, rpsJ, rpsP, sdhC, sodA, soxR, soxS, ssuE, sucA, tar, tdcA, tpx, ubiC, upp, uxaC, xdhA, ybdN, ychO, ydeJ, ydhY, yecR, yeiL, pdeF, ygbA, ccp, ynfE, ysgA, ytfE, zwf Read more >
Simple and complex regulons	AcrR,FNR,Fur,SoxR AcrR,FNR,Fur,SoxR,SoxS AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR,ppGpp AdiY,ArgR,CRP,FNR,Fur,GadE,HdfR,IHF,Lrp,Nac ArcA,CRP,CaiF,FNR,H-NS ArcA,CRP,Cra,CusR,FNR,Fis,Fur,GadE,HprR,PdhR ArcA,CRP,Cra,FNR,MarA,Rob,SoxS ArcA,CRP,DnaA,FNR,MarA,Rob,SoxS ArcA,CRP,DpiA,FNR,NarL ArcA,CRP,FNR ArcA,CRP,FNR,Fis,FlhDC,GlpR ArcA,CRP,FNR,Fis,Fur ArcA,CRP,FNR,Fis,Fur,PdhR ArcA,CRP,FNR,Fur ArcA,CRP,FNR,Fur,IHF,MarA,Rob,SoxR,SoxS ArcA,CRP,FNR,Fur,MarA,SoxR,SoxS ArcA,CRP,FNR,Fur,NarL,SoxS ArcA,CRP,FNR,IHF,NarL ArcA,CysB,FNR ArcA,DksA-ppGpp,FNR ArcA,FNR ArcA,FNR,Fis,Fur ArcA,FNR,Fis,Fur,IHF,NsrR,PdhR ArcA,FNR,Fur,IHF ArcA,FNR,H-NS ArcA,FNR,H-NS,HypT ArcA,FNR,IHF ArcA,FNR,IHF,NarL ArcA,FNR,NarL ArcA,FNR,NarL,NsrR ArcA,FNR,NsrR ArcA,FNR,PhoP ArcA,FNR,PuuR ArgP,CRP,FNR,Fur,Nac BtsR,CRP,Cra,FNR,PdhR CRP,CaiF,FNR CRP,Cra,FNR,Fis,H-NS,IHF,NarL,NarP CRP,DcuR,FNR,NarL CRP,DksA-ppGpp,FNR,Fis CRP,DksA-ppGpp,FNR,Fis,H-NS,SlyA CRP,DpiA,FNR,NarL CRP,ExuR,FNR CRP,FNR CRP,FNR,FhlA,HyfR CRP,FNR,Fis,GlpR,IHF CRP,FNR,GcvA,Lrp,PurR CRP,FNR,H-NS,NarL CRP,FNR,IHF,TdcA,TdcR CRP,FNR,NarL CadC,FNR,H-NS,LeuO,MlrA,OmpR Cbl,CysB,FNR,IHF CdaR,FNR,Fur,H-NS Cra,FNR,Fur,MarA,Rob,SoxS CueR,FNR DcuR,FNR,NarL DksA,FNR,ppGpp DksA-ppGpp,FNR EvgA,FNR FNR FNR,FhlA,NarL,NarP FNR,Fis,FlhDC,IHF,NarL,NarP,NsrR FNR,Fis,IHF,NarL FNR,Fis,IHF,NarL,RstA FNR,Fis,NarL FNR,FlhDC FNR,FlhDC,ModE,NarL,NarP FNR,Fur FNR,Fur,GadE FNR,Fur,GadX,NtrC FNR,Fur,H-NS FNR,Fur,MetR,NsrR,ppGpp FNR,Fur,Nac,NtrC FNR,Fur,NagC,OmpR FNR,Fur,OxyR FNR,GadE,GadW,GadX,H-NS,PhoB,RutR FNR,H-NS FNR,H-NS,NrdR FNR,IHF FNR,IHF,Lrp,YeiL FNR,IHF,NarL,NarP,NorR FNR,IHF,PhoB FNR,MalT FNR,ModE FNR,NarL FNR,NarL,NarP FNR,NarL,NarP,NsrR FNR,NarL,NarP,NsrR,OxyR FNR,NarL,NikR FNR,NfeR FNR,NsrR FNR,OxyR FNR,PurR Read more >
Simple and complex regulatory phrases	Regulatory phrase (List of promoters regulated by the phrase) [FNR,-](59) aceEp1, aceEp2, acnAp2, aldAp, arcAp3, aspCp, citCp2, cydAp1, cydAp2, cydAp3, cydAp4, cyoAp, dpiBp1, dppAp, fdnGp, fnrp, fumAp, fumCp2, gadAp, gadAp2, gadXp, glnDp, glnKp, gltBp, gltBp2, gndp, grcAp1, hemAp1, hmpp, hyfAp, lpdAp, moeAp, nacp, narXp, ndhp, norVp, nuoAp2, ompWp, ompXp2, pdhRp, pdhRp2, purMp, puuAp, rplMp, rplTp, rpsPp, sdhCp, sodAp, soxRp, soxSp, sucAp, tpxp, ubiCp, ychOp, yeiLp, ygbAp, ysgAp, ytfEp, zwfp [FNR,+](79) ackAp, acrEp, adhEp2, aerp, ansBp2, arcAp1, aspAp, aspCp, bcsBp, cadCp, caiFp, caiTp, cydAp2, cydDp, dcuBp1, dcuCp, dcuSp, dmsAp1, emrKp, fdhFp, fdnGp, feoAp, fesp, fixAp, fnrSp, focAp1, focAp3, frdAp, frdAp2, fumBp, garPp, gcvTp, gdhAp, glnDp, glnKp, glpABCp, glpTQp, grcAp1, hcpp1, hlyEp, hypBp, idlPp, iraDp2, iraMp1, katGp, lpdAp, malPp, moaAp1, napFp1, narGp, narKp1, nfeRp, nikAp1, nirBp, nrdDp, nrfAp, ompWp, pdhRp, pdhRp2, pepTp, pitAp, pstSp, pstSp2, ravAp, rpsJp, ssuEp, tarp, tdcAp, uppp, uxaCp2, xdhAp1, ybdNp, ydeJp, ydhYp, yecRp, yfgFp, yhjAp, ynfEp, ynfEp2

Transcription factor binding sites (TFBSs) arrangements

Functional conformation	Function	Promoter	Sigma factor	Central Rel-Pos	Distance to first Gene	Genes	Sequence	LeftPos	RightPos	Evidence	Confidence level (C: Confirmed, S: Strong, W: Weak)	References
FNR	repressor	aceEp1	Sigma70	nd	nd	aceE, aceF	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[1], [2]
FNR	repressor	aceEp2	Sigma38	nd	nd	aceE, aceF	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[1], [2]
FNR	activator	ackAp	Sigma32	nd	nd	ackA	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[2]
FNR	repressor	acnAp2	Sigma70	-40.5	-90.5	acnA	tttatcaattTGGGTTGTTATCAAatcgttacgc nd	1335734	1335747	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[3]
FNR	activator	acrEp	Sigma70	nd	nd	acrE, acrF	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	activator	adhEp2	Sigma38	-42.5	-230.5	adhE	ttgcaaaaatTTGATTTGGATCACgtaatcagta nd	1298345	1298358	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[5]
FNR	activator	aerp	Sigma28	-49.5	-93.5	aer	atcgcaaattGCGATCTAAATCAAattaatcggt nd	3219163	3219176	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	repressor	aldAp	Sigma70	-10.5	-52.5	aldA	tctctgatgaTTGATGTTAATTAAcaatgtattc nd	1488173	1488186	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	ansBp2	Sigma70	-41.5	-64.5	ansB	acgttgtaaaTTGTTTAACGTCAAatttcccata nd	3100786	3100799	[EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	S	[7]
FNR	activator	arcAp1	Sigma70	-82.5	-284.5	arcA	acaattgaacTTGATATATGTCAAcgaagcgtag nd	4640584	4640597	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[8], [8], [9]
FNR	repressor	arcAp3	Sigma70	-55.5	-284.5	arcA	acaattgaacTTGATATATGTCAAcgaagcgtag nd	4640584	4640597	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[8], [8], [9]
FNR	activator	aspAp	Sigma70	-40.5	-145.5	aspA, dcuA	gacacttaaaGTGATCCAGATTACggtagaaatc nd	4368466	4368479	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[10], [10], [11]
FNR	activator	aspCp	nd	nd	nd	aspC	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	repressor	aspCp	nd	nd	nd	aspC	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	activator	bcsBp	Sigma70	nd	nd	bcsB, bcsZ	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	activator	cadCp	Sigma70	-156.5	-185.5	cadC	atgatgaattTTGATGGTAAGGAAtattacttct nd	4362113	4362126	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	caiFp	Sigma70	-55.5	-137.5	caiF	atcgatatttTTGATGACATAAGCaggatttagc nd	34156	34169	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[12]
FNR	activator	caiTp	Sigma70	-90.5	-196.5	caiT, caiA, caiB, caiC, caiD, caiE	aaactgattaTTAATCAAAATTAAcgaaaaaacg nd	42121	42134	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4], [6], [6]
FNR	activator	caiTp	Sigma70	-41.5	-147.5	caiT, caiA, caiB, caiC, caiD, caiE	aaacaaaaatGTGATACCAATCACagaatacagc nd	42072	42085	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4], [6], [6]
FNR	repressor	citCp2	nd	11.5	-172.5	citC, citD, citE, citF, citX, citG	ctaactctatGTGAAATAAATCAAaatttcacgc nd	652022	652035	[COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[13], [13]
FNR	repressor	cydAp1	Sigma70	-53.5	-341.5	cydA, cydB	tttgtaggaaTTGATATTTATCAAtgtataagtc nd	771110	771123	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [14], [15], [16], [17], [17], [18], [18], [19]
FNR	repressor	cydAp1	Sigma70	-1.5	-289.5	cydA, cydB	aagagataaaTTGTTCTCGATCAAattggctgaa nd	771162	771175	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [14], [15], [17], [17], [18], [18], [19], [20]
FNR	activator	cydAp2	Sigma70	-167.5	-341.5	cydA, cydB	tttgtaggaaTTGATATTTATCAAtgtataagtc nd	771110	771123	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [17], [17], [18], [18], [19]
FNR	repressor	cydAp2	Sigma70	-115.5	-289.5	cydA, cydB	aagagataaaTTGTTCTCGATCAAattggctgaa nd	771162	771175	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [17], [17], [18], [19], [20]
FNR	repressor	cydAp3	Sigma70	-85.5	-341.5	cydA, cydB	tttgtaggaaTTGATATTTATCAAtgtataagtc nd	771110	771123	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [17], [17], [18], [18], [19]
FNR	repressor	cydAp3	Sigma70	-33.5	-289.5	cydA, cydB	aagagataaaTTGTTCTCGATCAAattggctgaa nd	771162	771175	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [17], [17], [18], [19], [20]
FNR	repressor	cydAp4	Sigma70	-96.5	-341.5	cydA, cydB	tttgtaggaaTTGATATTTATCAAtgtataagtc nd	771110	771123	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [17], [17], [18], [18], [19]
FNR	repressor	cydAp4	Sigma70	-44.5	-289.5	cydA, cydB	aagagataaaTTGTTCTCGATCAAattggctgaa nd	771162	771175	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[4], [17], [17], [18], [19], [20]
FNR	activator	cydDp	Sigma70	-90.5	-159.5	cydD, cydC	atggcagcacTTGATGCGGAACGCtacctcgatg nd	931115	931128	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[21]
FNR	repressor	cyoAp	Sigma70	-192.5	-235.5	cyoA, cyoB, cyoC, cyoD, cyoE	ttgttaaataATTGTTTTATTTCAcattggttat nd	451839	451852	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [6], [6], [9], [10], [14]
FNR	activator	dcuBp1	Sigma70	-45.5	-65.5	dcuB, fumB	ctgaaaacagTTCATACAAAACAGaacgtgactg nd	4348803	4348816	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[11], [22]
FNR	activator	dcuCp	nd	-115.5	-230.5	dcuC	gctaacaccaTTGCAATTAACAAAtttgcatcaa nd	656192	656205	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[23]
FNR	activator	dcuCp	nd	-63.5	-178.5	dcuC	acattattatGTGATAATTGCCAAccgctaaata nd	656140	656153	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[23]
FNR	activator	dcuCp	nd	-33.5	-148.5	dcuC	aatatgcgttTTGTTATCTATGTAtaaaaacagc nd	656110	656123	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[23], [23]
FNR	activator	dcuSp	Sigma70	nd	nd	dcuS, dcuR	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	activator	dmsAp1	Sigma70	-41.5	-177.5	dmsA, dmsB, dmsC	ttgtctccctTTGATACCGAACAAtaattactcc nd	940775	940788	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[24], [24], [25], [25], [26], [26], [27]
FNR	repressor	dpiBp1	nd	45.5	-206.5	dpiB, dpiA	gcgtgaaattTTGATTTATTTCACatagagttag nd	652022	652035	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[13], [13]
FNR	repressor	dppAp	Sigma70	-162.5	-327.5	dppA, dppB, dppC, dppD, dppF	tcaccaaatgTTGCTAAATATTAAgctgattgtt nd	3708026	3708039	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	emrKp	nd	nd	nd	emrK, emrY	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	activator	fdhFp	Sigma54	nd	nd	fdhF	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[4]
FNR	activator	fdnGp	Sigma70	-97.5	-126.5	fdnG, fdnH, fdnI	tctaccgctaTTGAGGTAGGTCAAtttgcgaagg nd	1547268	1547281	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[28], [28]
FNR	repressor	fdnGp	Sigma70	-97.5	-126.5	fdnG, fdnH, fdnI	tctaccgctaTTGAGGTAGGTCAAtttgcgaagg nd	1547268	1547281	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[28], [28]
FNR	activator	fdnGp	Sigma70	-42.5	-71.5	fdnG, fdnH, fdnI	gatgttctttTTGATTTCGCGCAAaaagattcag nd	1547323	1547336	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[10], [28], [28]
FNR	activator	feoAp	Sigma70	-90.5	-196.5	feoA, feoB, feoC	gctgcgatatAACCTTGAGCCACATCAACATTGagtcagatta nd	3539956	3539978	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[29], [29]
FNR	activator	fesp	Sigma70	-143.5	-193.5	fes, ybdZ, entF, fepE	aactgtcgggCATGGTCGTCATCAacacgacgca nd	612537	612550	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	fixAp	Sigma70	-197.5	-275.5	fixA, fixB, fixC, fixX	cgttttttcgTTAATTTTGATTAAtaatcagttt nd	42121	42134	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4], [6], [6]
FNR	activator	fnrSp	Sigma70	-42.5	-42.5	fnrS	gccgcaaagtTTGAGCGAAGTCAAtaaactctct nd	1409080	1409093	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[30], [30]
FNR	repressor	fnrp	Sigma70	-0.5	-26.5	fnr	gatgttaaaaTTGACAAATATCAAttacggcttg nd	1399546	1399559	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[31], [31], [32]
FNR	activator	focAp1	Sigma70	-40.5	-67.5	focA, pflB	caggcgagatATGATCTATATCAAtttctcatct nd	954527	954540	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	C	[33], [33], [34], [35], [36], [37], [38], [39]
FNR	activator	focAp3	Sigma70	-58.5	-406.5	focA, pflB	gcattctgggCAAAATAAAATCAAatagcctacg nd	954866	954879	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	S	[2], [33], [33], [35], [36], [37], [38], [39]
FNR	activator	frdAp	Sigma70	-45.5	-139.5	frdA, frdB, frdC, frdD	actaaaaaaaTCGATCTCGTCAAAtttcagactt nd	4382451	4382464	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[2], [22], [27], [40]
FNR	activator	frdAp2	Sigma38	-45.5	-139.5	frdA, frdB, frdC, frdD	actaaaaaaaTCGATCTCGTCAAAtttcagactt nd	4382451	4382464	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[2], [22], [27], [40]
FNR	repressor	fumAp	Sigma70	nd	nd	fumA, fumC	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[41]
FNR	activator	fumBp	Sigma70	-114.5	-136.5	fumB	tctgccggggTTGATTGGTGTGAGcgtatcgtgc nd	4347456	4347469	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[10], [10], [42], [42], [43]
FNR	activator	fumBp	Sigma70	-61.5	-83.5	fumB	ccgcgatgtaCGGGTTCTTATAAAtgcactttgc nd	4347403	4347416	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[42], [42], [43]
FNR	activator	fumBp	Sigma70	-57.5	-79.5	fumB	gatgtacgggTTCTTATAAATGCActttgcgtgc nd	4347399	4347412	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[42], [42], [43]
FNR	repressor	fumCp2	Sigma38	nd	nd	fumC	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	repressor	gadAp	Sigma70	11.5	-16.5	gadA, gadX	ttattgccttCAAATAAATTTAAGgagttcgaaa nd	3667590	3667603	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	repressor	gadAp2	Sigma38	11.5	-16.5	gadA, gadX	ttattgccttCAAATAAATTTAAGgagttcgaaa nd	3667590	3667603	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	repressor	gadXp	Sigma38	-159.5	-188.5	gadX, gadW	aagggattatTTGCTTACTATTAAtttccctgtg nd	3665992	3666005	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	garPp	Sigma70	nd	nd	garP, garL, garR, garK, rnpB	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	gcvTp	Sigma70	nd	nd	gcvT, gcvH, gcvP	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	activator	gdhAp	Sigma70	nd	nd	gdhA	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	activator	glnDp	nd	nd	nd	glnD	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	repressor	glnDp	nd	nd	nd	glnD	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	activator	glnKp	Sigma54	nd	nd	glnK, amtB	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	repressor	glnKp	Sigma54	nd	nd	glnK, amtB	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	activator	glpABCp	Sigma70	-40.5	-104.5	glpA, glpB, glpC	gttcaaaatgACGCATGAAATCACgtttcacttt nd	2352536	2352549	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[44], [45], [45], [46], [47]
FNR	activator	glpABCp	Sigma70	-0.5	-64.5	glpA, glpB, glpC	atgagcgaatATGCGCGAAATCAAacaattcatg nd	2352576	2352589	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[44], [45], [45], [46], [47]
FNR	activator	glpTQp	Sigma70	-131.5	-208.5	glpT, glpQ	catgaattgtTTGATTTCGCGCATattcgctcat nd	2352576	2352589	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[45], [45], [46], [46], [47]
FNR	activator	glpTQp	Sigma70	-91.5	-168.5	glpT, glpQ	aaagtgaaacGTGATTTCATGCGTcattttgaac nd	2352536	2352549	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[45], [45], [46], [46], [47]
FNR	repressor	gltBp	Sigma70	-26.5	-242.5	gltB, gltD, gltF	agcttgccatTTGACCTGTATCAGctttcccgat nd	3354476	3354489	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6], [9]
FNR	repressor	gltBp2	Sigma38	-26.5	-242.5	gltB, gltD, gltF	agcttgccatTTGACCTGTATCAGctttcccgat nd	3354476	3354489	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6], [9]
FNR	repressor	gndp	Sigma70	nd	nd	gnd	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	repressor	grcAp1	Sigma70	-93.5	-167.5	grcA	cccgcataagTTGATGTAAAACAAtaaaatccat nd	2716610	2716623	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[9], [48], [49], [50]
FNR	activator	grcAp1	Sigma70	-40.5	-114.5	grcA	gtggtttttaTTGATTTAAATCAAagattcaagg nd	2716557	2716570	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[2], [48], [49], [50]
FNR	repressor	grcAp1	Sigma70	-40.5	-114.5	grcA	gtggtttttaTTGATTTAAATCAAagattcaagg nd	2716557	2716570	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[2], [48], [49], [50]
FNR	activator	hcpp1	nd	-72.5	-103.5	hcp, hcr, poxB	gccgccaaaaTTGCGCTAAATCAAtctcccttaa nd	913911	913924	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[51], [51], [52], [52], [53]
FNR	repressor	hemAp1	Sigma70	-24.5	-62.5	hemA, prfA, prmC	ctctcttttaTTGATCTTACGCATcctgtatgat nd	1263645	1263658	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[26], [54], [54], [55], [55]
FNR	activator	hlyEp	nd	-61.5	-133.5	hlyE	taaacattgtTTGATATTTATCATattaatagaa nd	1230521	1230534	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[56], [56], [57]
FNR	repressor	hmpp	Sigma38	5.5	-33.5	hmp	taagatgcatTTGAGATACATCAAttaagatgca nd	2685795	2685808	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[58], [58], [59], [60]
FNR	repressor	hyfAp	Sigma54	-105.5	-135.5	hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB	aatccattttTTGCTGAACGTTAAtgaccatcat nd	2601059	2601072	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[61], [61]
FNR	activator	hypBp	nd	-149.5	-311.5	hypB, hypC, hypD, hypE, fhlA	ggcactggaaTTGATCGAACAGCAggccgcaaaa nd	2850683	2850696	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[62], [62]
FNR	activator	hypBp	nd	-43.5	-205.5	hypB, hypC, hypD, hypE, fhlA	gccttttgttTTGATCTGGTTTGCcgcggcagcg nd	2850789	2850802	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[62], [62]
FNR	activator	idlPp	Sigma38	nd	nd	idlP, iraD	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	iraDp2	Sigma70	nd	nd	idlP, iraD	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	iraMp1	nd	-70.5	-157.5	iraM	aaatctcattTTGTTTAACATCCAttgagattcc nd	1212154	1212167	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[63], [63]
FNR	activator	katGp	Sigma70	-112.5	-135.5	katG	atcaaaaaagCTTAATTAAGATCAatttgatcta nd	4133693	4133706	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	katGp	Sigma70	-96.5	-119.5	katG	taagatcaatTTGATCTACATCTCtttaaccaac nd	4133709	4133722	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP]	S	[6], [6], [64], [64]
FNR	activator	lpdAp	Sigma70	nd	nd	lpd	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4], [9]
FNR	repressor	lpdAp	Sigma70	nd	nd	lpd	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4], [9]
FNR	activator	malPp	Sigma70	-127.5	-164.5	malP, malQ	ttgcattgatTTGATGCTAATCCTgtggtttgca nd	3552631	3552644	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	moaAp1	nd	-39.5	-256.5	moaA, moaB, moaC, moaD, moaE	tgcctccctgATGATGTATATCAAagtaaaaccg nd	816781	816794	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[65], [65], [66]
FNR	repressor	moeAp	Sigma70	34.5	4.5	moeA, moeB	caggagtgttTTCATGGAATTTACcaccggattg nd	866354	866367	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[67], [67]
FNR	repressor	nacp	Sigma54	nd	nd	nac	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	activator	napFp1	Sigma70	-64.5	-141.5	napF, napD, napA, napG, napH, napB, napC, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH	cgccactcttTTGATCCTGCTACAggttttaccc nd	2303632	2303645	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[68], [68], [69], [69]
FNR	activator	narGp	Sigma70	-41.5	-98.5	narG, narH, narJ, narI	cccatcactcTTGATCGTTATCAAttcccacgct nd	1279759	1279772	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[25], [26], [26], [32], [70]
FNR	activator	narKp1	Sigma70	-79.5	-104.5	narK, narS	actatgggtaATGATAAATATCAAtgatagataa nd	1277846	1277859	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	S	[71]
FNR	activator	narKp1	Sigma70	-41.5	-66.5	narK, narS	atcttatcgtTTGATTTACATCAAattgccttta nd	1277884	1277897	[EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[26], [26], [64], [64], [72]
FNR	repressor	narXp	Sigma70	-106.5	-265.5	narX, narL	aatttgatgtAAATCAAACGATAAgataacttta nd	1277877	1277890	[COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[64], [73], [74]
FNR	repressor	narXp	Sigma70	-75.0	-234.0	narX, narL	tatctatcatTGATATTTATCATTacccatagtg nd	1277845	1277858	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[74]
FNR	repressor	narXp	Sigma70	107.5	-52.5	narX, narL	ccattccagaATGTATCGTCACATtcattaaggt nd	1277664	1277677	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[74]
FNR	repressor	ndhp	Sigma70	-94.5	-187.5	ndh	actctgttttTTGATCTCACCCGGtaaagtcgcc nd	1165891	1165904	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	S	[4], [9], [75], [75], [76]
FNR	repressor	ndhp	Sigma70	-50.5	-143.5	ndh	gcaacaaaacTTGATTAACATCAAttttggtatg nd	1165935	1165948	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	S	[4], [9], [75], [75], [76]
FNR	activator	nfeRp	nd	nd	nd	nfeR	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	nikAp1	nd	-40.5	-79.5	nikA, nikB, nikC, nikD, nikE, nikR	tgcccatctaTTGATCCAGAACAGGtaatcagtat nd	3613581	3613595	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[77], [78]
FNR	activator	nirBp	Sigma70	-41.5	-65.5	nirB, nirD, nirC, cysG	aaaggtgaatTTGATTTACATCAAtaagcggggt nd	3493939	3493952	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[27], [27], [32], [32], [79], [79], [80], [80], [81], [81]
FNR	repressor	norVp	Sigma54	-140.5	-177.5	norV, norW	aaactcatctTTGCCTCACTGTCAatttgactat nd	2832292	2832305	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[82], [82]
FNR	activator	nrdDp	Sigma70	-64.5	-242.5	nrdD, nrdG	gctttttactTTGAGCTACATCAAaaaaagctca nd	4462896	4462909	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[83], [83], [84], [84]
FNR	activator	nrdDp	Sigma70	-33.5	-211.5	nrdD, nrdG	tcaaacatccTTGATGCAAAGCACtatatataga nd	4462865	4462878	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[83], [83], [84], [84]
FNR	activator	nrfAp	Sigma70	-41.5	-134.5	nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG	gcacttacaaTTGATTAAAGACAAcattcacagt nd	4287623	4287636	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[85], [85], [86], [86]
FNR	repressor	nuoAp2	Sigma70	-40.5	-130.5	nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN	gaaaggagtaAAAAACCACATCAAttagctgtat nd	2405196	2405209	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION]	S	[4], [9], [87]
FNR	repressor	ompWp	nd	-126.5	-155.5	ompW	tatttaaaaaTTGATTTAAATCACattaaccagg nd	1313858	1313871	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[88], [88], [89]
FNR	activator	ompWp	nd	-81.5	-110.5	ompW	aacttctaaaTTAATCCAGATCAAtaaagggtga nd	1313903	1313916	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[6], [6], [88], [88]
FNR	repressor	ompXp2	nd	nd	nd	ompX	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	pdhRp	Sigma70	-50.5	-108.5	pdhR, aceE, aceF, lpd	gcacagtttcATGATTTCAATCAAaacctgtatg nd	121977	121990	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	S	[1], [1], [4], [6]
FNR	repressor	pdhRp	Sigma70	-50.5	-108.5	pdhR, aceE, aceF, lpd	gcacagtttcATGATTTCAATCAAaacctgtatg nd	121977	121990	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	S	[1], [1], [4], [6]
FNR	activator	pdhRp2	Sigma38	-50.5	-108.5	pdhR, aceE, aceF, lpd	gcacagtttcATGATTTCAATCAAaacctgtatg nd	121977	121990	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	S	[1], [1], [4], [6]
FNR	repressor	pdhRp2	Sigma38	-50.5	-108.5	pdhR, aceE, aceF, lpd	gcacagtttcATGATTTCAATCAAaacctgtatg nd	121977	121990	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	S	[1], [1], [4], [6]
FNR	activator	pepTp	nd	nd	nd	pepT	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	pitAp	nd	nd	nd	pitA	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[6], [6]
FNR	activator	pstSp	Sigma70	nd	nd	pstS, pstC, pstA, pstB, phoU	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	activator	pstSp2	Sigma38	nd	nd	pstS, pstC, pstA, pstB, phoU	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	repressor	purMp	Sigma70	-192.5	-236.5	purM, purN	attcttttcgTTGACTTTAGTCAAaatgataacg nd	2620954	2620967	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[4], [4], [90], [90]
FNR	repressor	puuAp	Sigma38	29.0	-32.0	puuA, ymjE, puuP	attttacgctTTGATAACGAGCGGaaaacaaacc nd	1360933	1360946	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[63], [63]
FNR	activator	ravAp	Sigma38	-201.5	-236.5	ravA, viaA	cgggcaatgaTTGCTTATTATCAGtgctcataga nd	3931323	3931336	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[91], [91]
FNR	activator	ravAp	Sigma38	-71.5	-106.5	ravA, viaA	tgcggccacaTTAACCTGGCTCAAagaaaaatac nd	3931193	3931206	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[91], [91]
FNR	repressor	rplMp	nd	nd	nd	rplM, rpsI	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[4], [4]
FNR	repressor	rplTp	nd	nd	nd	rplT, pheM	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[4]
FNR	activator	rpsJp	Sigma70	nd	nd	rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[4]
FNR	repressor	rpsPp	Sigma70	nd	nd	rpsP, rimM, trmD, rplS	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[4]
FNR	repressor	sdhCp	Sigma70	nd	nd	sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9], [92], [92]
FNR	repressor	sodAp	Sigma70	-37.5	-88.5	sodA	aagtacggcaTTGATAATCATTTTcaatatcatt nd	4100715	4100728	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[9], [93], [94]
FNR	repressor	soxRp	Sigma70	nd	nd	soxR	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	repressor	soxSp	Sigma70	nd	nd	soxS	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[9]
FNR	activator	ssuEp	Sigma70	nd	nd	ssuE, ssuA, ssuD, ssuC, ssuB	nd