Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
aaeA, aaeB, actP, aer, ampE, araE, araH, araJ, ascF, bglF, btsT, caiT, chbC, csgF, cstA, cyoA, cyoB, cyoC, cyoD, cyoE, dctA, dcuA, dcuB, dgoT, dpiB, dsdX, entB, entD, entE, envZ, exuT, fecC, fecD, focA, focB, frlA, fucP, gabP, gadC, galP, gatA, gatC, gcd, glpA, glpB, glpC, glpF, glpG, glpT, gntP, gntT, gntU, hofC, hyfB, hyfC, hyfD, hyfE, hyfF, idnT, lacY, lsrC, lsrD, malF, malG, manX, manY, manZ, mdtF, melB, mglC, modB, mtlA, nagE, nanT, narQ, nirC, nlpE, nupC, nupG, ompA, proP, ptsG, putP, rbsC, rhaT, rseC, sdhA, sdhB, sdhC, sdhD, tdcC, tnaB, treB, trg, ugpA, ugpE, uhpT, uidB, xylE, xylH, yiaM, yiaN, zraS
Transcription related (63) aaeR, araC, bglG, caiF, chbR, crp, csgD, csqR, cytR, dcuR, dgoR, dpiA, exuR, feaR, fis, flhC, flhD, frlR, fucR, fur, gadE, gadX, galS, glcC, glnG, glpR, gutM, hupA, hupB, hyfR, idnR, lacI, lsrR, malI, malT, marA, marR, melR, mhpR, mlc, mtlR, nagC, nusA, ompR, oxyR, pdhR, plaR, prpR, rbsR, rhaR, rhaS, rof, rpoE, rpoH, rseA, rseB, rseC, srlR, tdcA, uxuR, xylR, yjhI, zraR
Porters (Uni-, Sym- and Antiporters) (40) actP, araE, araJ, btsT, caiT, dctA, dcuA, dcuB, dgoT, dsdX, exuT, focA, focB, frlA, fucP, gabP, gadC, galP, glpT, gntP, gntT, gntU, idnT, lacY, melB, nanT, nirC, nupC, nupG, proP, putP, rhaT, tdcC, tnaB, uhpT, uidB, xylE, yiaM, yiaN, yiaO
aaeR, araC, bglG, caiF, chbR, crp, csgD, cytR, dcuR, dpiA, feaR, fis, flhC, flhD, fucR, fur, gadE, gadX, glcC, glnG, gutM, hupA, hupB, hyfR, idnR, malT, marA, melR, mhpR, nagC, ompR, oxyR, pdhR, prpR, rhaR, rhaS, tdcA, xylR, zraR
araC, bglG, caiF, chbR, dgoR, dpiA, feaR, flhC, flhD, fucR, galS, glcC, glnG, glpR, gltF, hyfR, idnR, lacI, malI, malT, malY, marA, marR, melR, mhpR, mlc, nagC, ompR, pdhR, plaR, prpR, rbsR, rhaR, rhaS, srlR, tdcA, uxuR, xylR
araC, chbR, crp, csgD, csqR, cytR, dgoR, exuR, fis, flhC, flhD, frlR, fur, galS, glcC, glnG, glpR, hupA, hupB, idnR, lacI, lsrR, malI, marA, marR, mlc, mtlR, nagC, ompR, oxyR, pdhR, plaR, prpR, rbsR, srlR, uxuR, yjhI
Phosphotransferase Systems (PEP-dependent PTS) (26) agaV, agaW, ascF, bglF, chbA, chbB, chbC, crr, gatA, gatB, gatC, malX, manX, manY, manZ, mtlA, murP, nagE, ptsG, srlA, srlB, srlE, treB, ulaA, ulaB, ulaC
anaerobic respiration (18) dcuR, glpA, glpB, glpC, glpR, glpT, grcA, hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfR, narQ
ansB, dadA, dadX, dsdA, feaR, gcvH, gcvP, gcvT, glaH, lhgD, lpd, tdcA, tdcB, tdcE, tdcG, tnaA, tnaC
nucleotide and nucleoside conversions (16) cdd, cpdB, cytR, deoA, deoB, deoC, deoD, guaA, guaB, hpt, nrdA, nrdB, nupC, relA, tsx, udp
acnA, acnB, fumA, fumB, fumC, gltA, mdh, sdhA, sdhB, sdhC, sdhD, sucA, sucB, sucC, sucD
posttranslational modification (13) aceK, bglF, citC, citG, citX, dpiB, envZ, glnL, narQ, patZ, ptsG, yfaE, zraS
ABC superfamily, membrane component (13) araH, fecC, fecD, lsrC, lsrD, malF, malG, mglC, modB, rbsC, ugpA, ugpE, xylH
arfB, dksA, infB, mazF, raiA, rmf, rplI, rplM, rpsF, rpsI, rpsO, rpsR, spf
cyoA, cyoB, cyoC, cyoD, cyoE, glpD, glpT, sdhA, sdhB, sdhC, sdhD, ubiG
hflX, raiA, rbfA, relA, rimP, rmf, rplI, rplM, rpsF, rpsI, rpsO, rpsR
aaeR, cas1, cas2, cas3, casA, casB, casC, casD, casE, mazE, mazF
other (mechanical, nutritional, oxidative stress) (11) acnA, grcA, mazE, mazF, nlpE, oxyR, rpoE, rseA, rseB, rseC, ychH
acs, fadD, fadH, fadL, mhpB, mhpR, prpB, prpC, prpD, prpE, prpR
chiZ, cyaR, cyaR, hfq, hfq, malH, mcaS, mcaS, sdhX, spf, spf
caiC, caiE, caiF, feaB, feaR, nagE, puuB, puuC, puuD, puuE
two component regulatory systems (external signal) (10) dcuR, dpiA, dpiB, envZ, glnG, glnL, narQ, ompR, zraR, zraS
misc. glycerol metabolism (10) glpA, glpB, glpC, glpD, glpF, glpK, glpQ, glpT, gpsA, ugpQ
covalent modification, demodification, maturation (9) aceK, bglF, citC, envZ, glnL, narQ, patZ, ptsG, zraS
ABC superfamily, periplasmic binding component (9) araF, fecB, lsrB, malE, mglB, modA, rbsB, ugpB, xylF
ABC superfamily ATP binding cytoplasmic component (9) araG, fecE, lsrA, malK, mglA, modC, rbsA, ugpC, xylG
unassigned reversible reactions (9) caiF, citD, citE, citF, sgbH, tam, ulaE, ulaF, yjhH
Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily) (9) chiP, fadL, fecA, fepA, fiu, lamB, ompF, ompW, tsx
cstA, dksA, mazE, mazF, rseB, rseC, rspA, rspB, ytfK
gcd, glpA, glpB, glpC, glpD, sdhA, sdhB, sdhC, sdhD
drug resistance/sensitivity (8) ampE, marA, marB, marR, mazE, mazF, mdtE, mdtF
transcriptional level (8) comR, cspE, hupA, hupB, lgoR, nusA, puuR, rof
prophage genes and phage related functions (8) fadL, grpE, hflC, hflK, hfq, lamB, tsx, yjhG
amino sugar conversions (8) nagA, nagB, nagC, nagE, nanA, nanE, nanK, nanT
entH, fecA, fecB, fecC, fecE, fepA, fiu
fumB, fumC, mdh, pflB, tdcE, zraR, zraS
caiA, caiB, caiD, caiE, fixC, fixX
csqR, cytR, exuR, fur, oxyR, zraR
deoD, hofM, hofN, hofO, hofP, yhgH
translation attenuation and efficiency (6) dksA, hfq, mazF, mcaS, nagC, spf
enterochelin (enterobactin) (6) entA, entB, entC, entD, entE, entH
central intermediary metabolism (6) epd, gapA, glpX, mdh, pck, pgk
glnA, gltB, gltD, nirB, nirC, nirD
rplI, rplM, rpsF, rpsI, rpsO, rpsR
sigma factors, anti-sigmafactors (6) rpoE, rpoH, rpoS, rseA, rseB, rseC
aer, dctA, hicB, relA, sfsA
motility, chemotaxis, energytaxis (aerotaxis, redoxtaxis etc) (5) aer, flhC, flhD, malE, trg
caiA, cyoA, cyoB, cyoC, cyoD
inhibition / activation of enzymes (5) cyaA, malY, mcaS, ptsH, trg
cytoplasmic polysaccharides (5) glgA, glgC, glgP, glgS, mlc
phosphorous metabolism (5) gpsA, ugpA, ugpB, ugpC, ugpE
marA, marB, sodA, sodB, tam
fatty acids and phosphatidic acid (4) acs, fadH, glpF, glpT
misc. glucose metabolism (4) agp, gcd, gntK, treB
Accessory Factors Involved in Transport (4) csgE, mdtE, ptsH, ptsI
cspD, gyrA, priB, sbmC
nucleoproteins, basic proteins (4) fis, hfq, hupA, hupB
gadA, gadB, gadE, grcA
colanic acid (M antigen) (4) galE, galK, galT, manA
capsule (M and K antigens) (4) galE, galK, galT, manA
formyl-THF biosynthesis (4) gcvH, gcvP, gcvT, lpd
chaperoning, repair (refolding) (4) grpE, mglB, nfuA, ppiA
hfq, hicA, mazF, pnp
hlyE, mazE, mazF, sbmC
rbfA, rpoE, rpoH, rseA
aceA, aceB, aceK
pyruvate dehydrogenase (3) aceE, aceF, lpd
glyoxylate degradation (3) aceE, aceF, mdh
murein turnover, recycling (3) ampD, mpl, murQ
cirA, fepA, tsx
crp, hfq, mlc
Oxidoreduction-driven Active Transporters (3) cyoA, cyoB, cyoC
nicotinamide adenine dinucleotide (3) feaB, nadC, pncB
galE, galK, galT
gapA, pdhR, pgk
gdhA, gltB, gltD
glnA, glnG, glnL
proteins/peptides/glycopeptides (3) hflC, hflK, sohB
ilvB, ilvN, ivbL
paaI, preA, preT
tdcB, tdcD, tdcE
aaeA, aaeB
ampD, mpl
bhsA, hicB
cas1, sbmC
chbG, malS
Channel-type Transporters (2) csgG, nanC
dusB, truB
pyridoxal 5'phosphate (2) epd, gapA
energy production/transport (2) fixA, fixB
flhC, flhD
flhC, flhD
aminobutyrate catabolism (2) gabD, gabT
putrescine catabolism (2) gabD, gabT
guaA, guaB
proteases, cleavage of compounds (2) hflC, hflK
modA, modC
osmY, proP
rpoE, rpoH
sdhC, sdhD
serA, serC
acnA
acs
methylglyoxal metabolism (1) aldA
argG
aroA
aspA
aspA
amino acid conversion (1) aspA
bidA
Transporters of Unknown Classification (1) cirA
citD
csgF
cspD
csrC
cysG
dadX
Non-ribosomal peptide synthetase (1) entB
fadD
fis
fucO
surface antigens (ECA, O antigen of LPS) (1) galE
glpE
glpF
grpE
gutQ
murein (peptidoglycan) (1) ldtB
lsrF
lsrG
lsrK
sugar nucleotide biosynthesis, conversions (1) manA
manA
Putative uncharacterized transport protein (1) marB
Electrochemical potential driven transporters (1) mdtF
S-adenosyl methionine biosynthesis (1) metK
metY
incorporation of metal ions (1) nfuA
pnp
ppdD
rbfA
sbmC
sbmC
The Type II (General) Secretory Pathway (IISP) Family (1) secB
polyamine biosynthesis (1) speC
tdcC
tnaB
thioredoxin, glutaredoxin (1) trxA
menaquinone, ubiquinone (1) ubiG
pyrimidine ribonucleotide biosynthesis (1) umpH
xseA
xseA
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Simple and complex regulatory phrases |
Regulatory phrase (List of promoters regulated by the phrase)
 [CRP,-]( 85)
aaeRp, aceBp, ampD, araJp, azuCp, bhsAp, casAp, cddp, citCp2, comRp, crpp1, csqRp, csrCp, cyaAp, cytRp, dadAp1, deoCp2, dpiBp1, dusBp, exuRp2, gadAp, gadAp2, gadBp, gadBp2, gadEp2, galEp2, gcdp1, gdhAp, glnAp2, gltBp, gltBp2, hfqp3, lacZp2, lacZp3, ldtBp, lpdAp, malIp, manAp, metKp, metKp2, metYp2, mlcp1, nagBp, nagEp, narQp, nirBp, nupGp, ompRp1, ompRp4, ompWp, osmYp, osmYp2, pckp, plaRp, pncBp, ppiAp2, ppiAp3, ppiAp4, proPp1, psiEp, ptsHp2, putPp4, puuDp, rplMp, rpoHp3, rpoHp4, rpoHp5, rpoSp, serCp1, sodBp, sohBp, sohBp1, sohBp2, speCp, spfp, treBp, trxAp1, tsxp2, udpP, xseAp, yaePp, yaeQp, ybiTp, ycdZp4, yhfAp
 [CRP-Sxy,+]( 233)
aaeXp, acnAp2, acnBp1, acsp, acsp2, aerp, agpp, aldAp, aldBp, ansBp2, araBp, araCp, araEp, araFp1, araFp3, araJp, argGp, ascFp, aspAp, bglGp1, bglGp2, caiFp, caiTp, cas3p, cddp, chbBp, chiZp, cirAp1, cirAp2, cpdBp, crpp1, csgDp1, csgDp3, csiDp, csiEp, csiEp2, cspDp, cspEp2, csqRp, cstAp1, cyaRp, cyaRp2, cyaRp3, cyoAp, cytRp, dadAp1, dadAp2, dadAp3, dctAp, dcuBp1, dcuRp, deoCp2, dgoRp, dsdAp, dsdXp, dusBp, ebgAp, entCp, epdp, epdp2, exuTp2, fadDp, fadHp, fadLp, feaBp1, feaRp2, fecAp, fepAp, fiup, fixAp, flhDp, focAp1, frlAp1, fucAp, fucPp, fumAp, fumCp2, furpa, furpb, galEp, galEp1, galPp, galSp, gapAp3, gatYp, gcvTp, glcCp, glgCp1, glgSp1, glnAp1, glpABCp, glpDp, glpEp, glpFp, glpTQp, gltAp1, gntKp, gntPp, gntTp1, gntTp2, gntTp3, gntXp, grcAp1, grpEp, guaBp, gyrAp, hicAp1, hlyEp, hofMp, hptp, hupAp, hupBp3, hyfAp, idnDp, idnKp, ivbLp, kbaZp, lacZp1, ldtBp, lgoRp4, lsrAp, lsrRp, malEp, malIp, malKp, malSp, malTp, malXp, manAp, manXp, marRp, mcaSp, mdhp1, melAp, melRp, mglBp, mglBp2, mhpAp, mhpRp1, mlcp, mlcp2, modAp2, mplp, mplp1, mtlAp, murQp, murQp1, murQp2, nadCp, nagBp, nagEp, nanAp, nanCp, nmpCp, nrdAp, nupCp, nupGp, ompAp1, ompFp, ompFp2, ompRp2, ompRp3, oxyRp, oxyRp2, paaAp, paaZp, pckp, pdhRp, pdhRp2, pkap, ppdDp, ppiAp2, ppiAp3, preTp, proPp2, prpBp, prpRp, ptsGp1, ptsHp, ptsHp1, ptsHp4, ptsHp5, raiAp, rbsDp, relAp2, rhaBp, rhaSp, rhaSp2, rhaTp, rmfp, rpoEp2b, rpoHp5, rpsFp, rseDp, rspAp, sbmCp2, sdhCp, sdhDp, secBp, serAp2, sfsAp, sodAp, srlAp, sxyp, tdcAp, tnaCp, trgp, tsxp2, ubiGp, udpP, ugpBp2, uhpTp, uidAp, ulaAp, uxaBp, uxaCp2, uxuAp, uxuRp, xylAp, xylEp, xylFp, ybiTp, ycdZp4, ychHp, yeiPp, yeiWp, yhfAp, yiaKp1, yjhIp, yjiYp, ykgRp, ytfKp2, zraSp
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