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H-NS DNA-binding transcriptional dual regulator

Synonyms: H-NS
Summary:
The H-NS protein, for "Histone-like nucleoid structuring protein," is a nucleoid-associated multifunctional protein that is capable of condensing |CITS: [10982869]| and supercoiling DNA |CITS: [16384714][15853876][11282470][8306968]|. It is a global transcriptional silencer of genes with high AT content |CITS: [15100692][18387844]|, regulates 5% of all Escherichia coli genes |CITS: [11298273]|, and plays a key role in global chromosome organization in bacteria |CITS: [21903814]|. This protein acts as a pleiotropic transcriptional factor with a strong preference for horizontally acquired genes among the 250 loci to which it binds |CITS: [2126011][17046956][31960057]|. H-NS functions almost exclusively as a transcriptional repressor, although there is no clear evidence that this regulator is an activator. Currently, no inducer for this regulator has been reported in the literature, although Reush et al. proposed that this regulator can form a complex with a short chain of polyhydroxybutyrate |CITS: [12220682]|. Additional genes might be identified by high-throughput analysis |CITS: [19151137]|. H-NS suppresses transcription initiation at many intragenic sites as well as transcription of non-coding RNAs genome-wide |CITS: [24449106]|, such as antisense RNAs located in regions enriched with RNA polymerase-binding RNA aptamers (RAPs) |CITS: [31535128]|. H-NS plays an important role in the regulation of many genes in response to environmental changes and adaptation to stress; therefore, it is capable of controlling its own synthesis |CITS: [7934818][8830277]|.
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Transcription factor      
TF conformation(s):
Name Conformation Type TF-Effector Interaction Type Apo/Holo Conformation Evidence (Confirmed, Strong, Weak) References
H-NS Functional   [APPH], [HIFS], [IEP], [IMP], [IPI] [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25]
Evolutionary Family: HNS
Connectivity class: Global Regulator
Gene name: hns
  Genome position: 1292509-1292922
  Length: 414 bp / 137 aa
Operon name: hns
TU(s) encoding the TF:
Transcription unit        Promoter
hns
hnsp


Regulon       
Regulated gene(s) acrE, acrF, adeD, adiA, adiY, alaU, alaV, appY, asr, bglB, bglF, bglG, bglJ, bolA, cadA, cadB, cadC, caiA, caiB, caiC, caiD, caiE, caiF, caiT, cas1, cas2, casA, casB, casC, casD, casE, chiA, cmoM, csgD, csgE, csgF, csgG, csiE, cspA, cspD, cydA, cydB, cysA, cysG, cysM, cysP, cysU, cysW, dctR, degP, dps, entF, evgA, evgS, fau, fepE, fes, fimA, fimB, fimC, fimD, fimE, fimF, fimG, fimH,
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Multifun term(s) of regulated gene(s) MultiFun Term (List of genes associated to the multifun term)
membrane (28)
Transcription related (26)
carbon compounds (25)
activator (22)
operon (17)
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Regulated operon(s) acrEF, adeD, adiA, adiY, appY, argT-hisJQMP, asr, bglGFB, bolA, cadBA, cadC, caiF, caiTABCDE, casABCDE12, chiA, cmoM-mukFEB, csgDEFG, csiE, cspA, cspD, cydAB, cysPUWAM, degP, dps, evgAS, fes-ybdZ-entF-fepE, fimAICDFGH, fimB, fimE, flhDC, fliAZ-tcyJ, fliC, ftnA, gadAXW, gadEF-mdtEF, galETKM, garPLRK-rnpB, glaH-lhgD-gabDTP, gspAB, gspCDEFGHIJKLMO, hchA, hdeAB-yhiD, hdeD, hdfR, hlyE, hns, ilvIH, lacZYA, leuO, lrp, malEFG, mdtJI, micF, nhaAR, nirBDC-cysG, nrdAB-yfaE, nrdDG, osmC, proVWX, rcsA, rcsDB, relA-mazEFG, rrsB-gltT-rrlB-rrfB, rrsC-gltU-rrlC-rrfC, rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF,
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First gene in the operon(s) acrE, adeD, adiA, adiY, appY, asr, bglG, bolA, cadB, cadC, caiF, caiT, casA, chiA, csgD, glaH, csiE, cspA, cspD, cydA, cysP, degP, dps, evgA, fes, fimA, fimB, fimE, flhD, fliA, fliC, ftnA, gadA, gadE, gadW, gadX, galE, garP, gspA, gspC, hchA, hdeA, hdeD, hdfR, hisJ, hlyE, hns, ilvI, lacZ, leuO, lrp, malE, mdtJ, micF, nhaA, nirB, nrdA, nrdD, osmC, proV, rcsA, rcsD, relA, rrsB, rrsC,
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Simple and complex regulons AcrR,CRP,FliZ,Fur,H-NS,HdfR,IHF,LrhA,MatA,OmpR,QseB,RcsAB,YjjQ
AcrR,H-NS,HU,IHF,Lrp,MarA,OmpR,Rob,SoxS
AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR
AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR,ppGpp
AdiY,H-NS,IHF
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Simple and complex regulatory phrases Regulatory phrase (List of promoters regulated by the phrase)
[H-NS,-](94)
[H-NS,+](15)


Transcription factor regulation    


Transcription factor binding sites (TFBSs) arrangements
      

  Functional conformation Function Promoter Sigma factor Central Rel-Pos Distance to first Gene Genes Sequence LeftPos RightPos Evidence (Confirmed, Strong, Weak) References
  H-NS repressor acrEp Sigma70 nd nd acrE, acrF nd nd [BPP], [GEA], [IGI] [26]
  H-NS repressor adep Sigma70 nd nd adeD nd nd [BPP], [GEA], [IGI] [27]
  H-NS repressor adiAp Sigma70 nd nd adiA nd nd [BPP], [GEA], [IGI] [28]
  H-NS repressor adiYp nd nd nd adiY nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor appYp Sigma70 nd nd appY nd nd [BPP], [GEA], [IGI] [30]
  H-NS repressor asrp Sigma70 nd nd asr nd nd [BPP], [GEA], [IGI] [31]
  H-NS repressor asrp2 Sigma38 nd nd asr nd nd [BPP], [GEA], [IGI] [31]
  H-NS repressor bglGp nd 680.0 550.0 bglG, bglF, bglB
cagttaatgcGCGAAATGCTGCAATTaataaaattt
3906011 3906025 [BPP], [GEA] [32], [33], [34], [35]
  H-NS repressor bolAp Sigma38 nd nd bolA nd nd [BPP], [GEA], [IGI] [36]
  H-NS repressor bolAp1 Sigma70 nd nd bolA nd nd [BPP], [GEA], [IGI] [36]
  H-NS repressor cadBp Sigma70 -317.0 -392.0 cadB, cadA
tccttatgttGTACCTTATCTCGACAaatttcttgc
4360416 4360430 [AIBSCS], [BPP], [GEA] [29], [37], [38]
  H-NS repressor cadBp Sigma70 -260.0 -335.0 cadB, cadA
ttgatttatgCTCGGAAATATTTGTTgttgagtttt
4360359 4360373 [AIBSCS], [BPP], [GEA] [28], [29], [37]
  H-NS repressor cadBp Sigma70 -175.0 -250.0 cadB, cadA
atttttattaCATAAATTTAACCAGAgaatgtcacg
4360274 4360288 [AIBSCS], [BPP], [GEA] [28], [29], [37]
  H-NS repressor cadBp Sigma70 -129.0 -204.0 cadB, cadA
taaacattaaATGTTTATCTTTTCATgatatcaact
4360228 4360242 [AIBSCS], [BPP], [GEA] [28], [29], [37]
  H-NS repressor cadBp Sigma70 -32.0 -107.0 cadB, cadA
ttcacctaatCTTTAGGATTAATCCTtttttcgtga
4360131 4360145 [AIBSCS], [BPP], [GEA] [28], [29], [37]
  H-NS repressor cadCp Sigma70 nd nd cadC nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor caiFp Sigma70 nd nd caiF nd nd [BPP], [GEA], [IGI] [39]
  H-NS repressor caiTp Sigma70 nd nd caiT, caiA, caiB, caiC, caiD, caiE nd nd [BPP], [GEA], [IGI] [40]
  H-NS repressor casAp Sigma70 -46.0 -227.0 casA, casB, casC, casD, casE, cas1, cas2
aaagtttcttTAATAATAAAACGAATaacttgcaga
2884358 2884372 [BPP], [GEA], [SM] [41], [42], [43], [44]
  H-NS repressor chiAp Sigma70 nd nd chiA nd nd [BPP], [GEA], [IGI] [45]
  H-NS activator cmoMp Sigma70 nd nd cmoM, mukF, mukE, mukB nd nd [BPP], [GEA], [IGI]
  H-NS repressor csgDp1 Sigma70 nd nd csgD, csgE, csgF, csgG nd nd [BPP], [GEA], [IGI] [46]
  H-NS repressor csgDp3 Sigma38 nd nd csgD, csgE, csgF, csgG nd nd [BPP], [GEA], [IGI] [46]
  H-NS activator csiDp Sigma38 nd nd glaH, lhgD, gabD, gabT, gabP nd nd [BPP], [GEA], [IGI] [47]
  H-NS activator csiEp Sigma70 nd nd csiE nd nd [BPP], [GEA], [IGI] [36]
  H-NS activator csiEp2 Sigma38 nd nd csiE nd nd [BPP], [GEA], [IGI] [36]
  H-NS repressor cspAp1 Sigma70 -143.5 -303.5 cspA
aagccaacccGGCATTAAGTAagcagttgat
3719741 3719751 [AIBSCS], [BPP], [GEA] [48]
  H-NS repressor cspAp1 Sigma70 -105.5 -265.5 cspA
acttttatccACTTTATTGCTgtttacggtc
3719779 3719789 [AIBSCS], [BPP], [GEA] [48]
  H-NS repressor cspAp1 Sigma70 -58.0 -218.0 cspA
cgttttccaaCCGATTAATCATAAATATgaaaaataat
3719823 3719840 [AIBSCS], [BPP], [GEA] [48]
  H-NS repressor cspAp1 Sigma70 -9.5 -169.5 cspA
ccaatgcgtgGCTTAATGCACatcaacggtt
3719875 3719885 [AIBSCS], [BPP], [GEA] [48]
  H-NS repressor cspAp1 Sigma70 23.5 -137.5 cspA
gacgtacagaCCATTAAAGCAgtgtagtaag
3719907 3719917 [AIBSCS], [BPP], [GEA] [48]
  H-NS activator cspDp Sigma70 nd nd cspD nd nd [BPP], [GEA], [IGI]
  H-NS repressor cydAp1 Sigma70 nd nd cydA, cydB nd nd [BPP], [GEA], [IGI] [49]
  H-NS repressor cydAp2 Sigma70 nd nd cydA, cydB nd nd [BPP], [GEA], [IGI] [49]
  H-NS repressor cydAp3 Sigma70 nd nd cydA, cydB nd nd [BPP], [GEA], [IGI] [49]
  H-NS repressor cydAp4 Sigma70 nd nd cydA, cydB nd nd [BPP], [GEA], [IGI] [49]
  H-NS repressor cysPp Sigma70 nd nd cysP, cysU, cysW, cysA, cysM nd nd [BPP], [GEA], [IGI] [50]
  H-NS repressor degPp Sigma24 nd nd degP nd nd [BPP], [GEA], [IGI] [51]
  H-NS repressor dpsp Sigma70 3.5 -36.5 dps
tatacttaatCTCGTTAATTActgggacata
848943 848953 [APIORCISFBSCS], [BPP], [GEA] [52]
  H-NS repressor dpsp2 Sigma38 3.5 -36.5 dps
tatacttaatCTCGTTAATTActgggacata
848943 848953 [APIORCISFBSCS], [BPP], [GEA] [52]
  H-NS repressor evgAp1 Sigma38 nd nd evgA, evgS nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor evgAp2 Sigma70 nd nd evgA, evgS nd nd [BPP], [GEA], [IGI] [29]
  H-NS activator fesp Sigma70 -0.5 -50.5 fes, ybdZ, entF, fepE
tatcaataatATTATCAATATATTTCtgcaatcaat
612679 612693 [GEA] [50]
  H-NS activator fimAp Sigma70 nd nd fimA, fimI, fimC, fimD, fimF, fimG, fimH nd nd [BPP], [GEA], [IGI] [53]
  H-NS repressor fimBp1 Sigma70 nd nd fimB nd nd [BPP], [GEA], [IGI] [54], [55], [56]
  H-NS repressor fimBp2 nd nd nd fimB nd nd [BPP], [GEA], [IGI] [54], [55], [56]
  H-NS repressor fimEp Sigma70 nd nd fimE nd nd [BPP], [GEA], [IGI] [56], [57]
  H-NS activator flhDp Sigma70 nd nd flhD, flhC nd nd [BPP], [GEA], [IGI] [58]
  H-NS activator fliAp1 Sigma70 nd nd fliA, fliZ, tcyJ nd nd [BPP], [GEA], [IGI] [59]
  H-NS activator fliCp Sigma28 nd nd fliC nd nd [BPP], [GEA], [IGI] [60]
  H-NS repressor ftnAp Sigma70 -131.5 -165.5 ftnA
ctttctctaaATATTTTAATCagcgagggga
1988546 1988556 [BPP], [GEA] [61]
  H-NS repressor ftnAp Sigma70 -101.5 -135.5 ftnA
aggggatcttCGCTGATTAAAGAAATAGCGGtaatgcgttt
1988571 1988591 [BPP], [GEA] [61]
  H-NS repressor ftnAp Sigma70 -83.0 -117.0 ftnA
aagaaatagcGGTAATGCGTTTTATTCCCAttcgtatttt
1988590 1988609 [BPP], [GEA] [61]
  H-NS repressor ftnAp Sigma70 -56.0 -90.0 ftnA
ttttattcccATTCGTATTTTTAATAATTGAAGTTTATATTTTACCttttgcaaat
1988609 1988644 [BPP], [GEA] [61]
  H-NS repressor ftnAp Sigma70 -20.5 -54.5 ftnA
tattttacctTTTGCAAATAATAAAATAACAAATTATAGTGACgccacagcaa
1988646 1988678 [BPP], [GEA] [61]
  H-NS repressor ftnAp Sigma70 15.5 -19.5 ftnA
acgccacagcAACAAATATAACCTTTGTGGAgcactatcat
1988687 1988707 [BPP], [GEA] [61]
  H-NS repressor gadAp Sigma70 nd nd gadA, gadX nd nd [BPP], [GEA], [IGI] [9], [62], [63]
  H-NS repressor gadAp2 Sigma38 nd nd gadA, gadX nd nd [BPP], [GEA], [IGI] [9], [62], [63]
  H-NS repressor gadEp Sigma38 nd nd gadE, gadF, mdtE, mdtF nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor gadWp2 nd nd nd gadW nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor gadXp Sigma38 nd nd gadX, gadW nd nd [BPP], [GEA], [IGI] [9], [64]
  H-NS repressor galEp Sigma38 -47.0 -73.0 galE, galT, galK, galM
taaacgattcCACTAATTTATTCCATgtcacacttt
792121 792135 [BPP] [65]
  H-NS repressor galEp Sigma38 -36.0 -62.0 galE, galT, galK, galM
actaatttatTCCATGTCACACTTTTcgcatctttg
792110 792124 [BPP] [65]
  H-NS repressor galEp Sigma38 -18.0 -44.0 galE, galT, galK, galM
acacttttcgCATCTTTGTTATGCTAtggttatttc
792092 792106 [BPP] [65]
  H-NS repressor galEp Sigma38 -2.0 -28.0 galE, galT, galK, galM
tgttatgctaTGGTTATTTCATACCAtaagcctaat
792076 792090 [BPP] [65]
  H-NS repressor galEp1 Sigma70 -47.0 -73.0 galE, galT, galK, galM
taaacgattcCACTAATTTATTCCATgtcacacttt
792121 792135 [BPP] [65]
  H-NS repressor galEp1 Sigma70 -36.0 -62.0 galE, galT, galK, galM
actaatttatTCCATGTCACACTTTTcgcatctttg
792110 792124 [BPP] [65]
  H-NS repressor galEp1 Sigma70 -18.0 -44.0 galE, galT, galK, galM
acacttttcgCATCTTTGTTATGCTAtggttatttc
792092 792106 [BPP] [65]
  H-NS repressor galEp1 Sigma70 -2.0 -28.0 galE, galT, galK, galM
tgttatgctaTGGTTATTTCATACCAtaagcctaat
792076 792090 [BPP] [65]
  H-NS repressor garPp Sigma70 nd nd garP, garL, garR, garK, rnpB nd nd [BPP], [GEA], [IGI] [50]
  H-NS repressor gspAp1 Sigma70 nd nd gspA, gspB nd nd [BPP], [GEA], [IGI] [66]
  H-NS repressor gspAp2 Sigma70 nd nd gspA, gspB nd nd [BPP], [GEA], [IGI] [66]
  H-NS repressor gspCp2 Sigma70 nd nd gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO nd nd [BPP], [GEA], [IGI] [66]
  H-NS repressor gspCp3 Sigma70 nd nd gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO nd nd [BPP], [GEA], [IGI] [66]
  H-NS repressor hchAp Sigma70 nd nd hchA nd nd [BPP], [GEA], [IGI] [67]
  H-NS repressor hchAp2 Sigma38 nd nd hchA nd nd [BPP], [GEA], [IGI] [67]
  H-NS repressor hdeAp Sigma70 -118.0 -169.0 hdeA, hdeB, yhiD
atgcagtcgaTTTAATAAAAATTTCCtaattgcagt
3656902 3656916 [APIORCISFBSCS], [BPP], [GEA] [68], [69], [70]
  H-NS repressor hdeAp2 Sigma38 -118.0 -169.0 hdeA, hdeB, yhiD
atgcagtcgaTTTAATAAAAATTTCCtaattgcagt
3656902 3656916 [APIORCISFBSCS], [BPP], [GEA] [68], [69], [70]
  H-NS repressor hdeDp Sigma70 nd nd hdeD nd nd [BPP], [GEA], [IGI] [70]
  H-NS repressor hdeDp2 Sigma38 nd nd hdeD nd nd [BPP], [GEA], [IGI] [70]
  H-NS repressor hdfRp Sigma38 nd nd hdfR nd nd [BPP], [GEA], [IGI] [29]
  H-NS activator hisJp Sigma70 nd nd hisJ, hisQ, hisM, hisP nd nd [BPP], [GEA], [IGI] [50]
  H-NS activator hlyEp nd -56.5 -128.5 hlyE
cattgtttgaTATTTATCATATTAATagaaataaag
1230515 1230529 [BPP], [GEA] [71], [72], [73]
  H-NS repressor hlyEp nd -56.5 -128.5 hlyE
cattgtttgaTATTTATCATATTAATagaaataaag
1230515 1230529 [BPP], [GEA] [71], [72], [73]
  H-NS activator hlyEp nd -6.0 -78.0 hlyE
cgcccggctaACTATGAATTAGATGAagtaaaattt
1230465 1230479 [BPP], [GEA] [71], [72], [73]
  H-NS repressor hlyEp nd -6.0 -78.0 hlyE
cgcccggctaACTATGAATTAGATGAagtaaaattt
1230465 1230479 [BPP], [GEA] [71], [72], [73]
  H-NS repressor hnsp Sigma70 -182.0 -218.0 hns
ccccataaaaTGTGACATGAATCAGGaagttttaac
1293133 1293147 [BPP], [GEA] [8], [20], [74]
  H-NS repressor hnsp Sigma70 -113.0 -149.0 hns
gctatatgccGCGTCTTTTCTGGCTAattttatgaa
1293064 1293078 [BPP], [GEA] [8], [20], [74]
  H-NS repressor hnsp Sigma70 -40.0 -76.0 hns
tgaattccttACATTCCTGGCTATTGcacaactgaa
1292991 1293005 [APIORCISFBSCS], [BPP], [GEA] [20], [74]
  H-NS repressor ilvIHp1 Sigma70 nd nd ilvI, ilvH nd nd [BPP], [GEA], [IGI] [75]
  H-NS repressor lacZp1 Sigma70 -67.0 -105.0 lacZ, lacY, lacA
agcgcaacgcAATTAATGTGAGTTAGctcactcatt
366403 366417 [BPP] [65], [76]
  H-NS repressor lacZp1 Sigma70 -54.0 -92.0 lacZ, lacY, lacA
taatgtgagtTAGCTCACTCATTAGGcaccccaggc
366390 366404 [BPP] [65], [76]
  H-NS repressor lacZp1 Sigma70 -31.0 -69.0 lacZ, lacY, lacA
aggcaccccaGGCTTTACACTTTATGcttccggctc
366367 366381 [BPP] [65], [76]
  H-NS repressor lacZp1 Sigma70 -5.0 -43.0 lacZ, lacY, lacA
cttccggctcGTATGTTGTGTGGAATtgtgagcgga
366341 366355 [BPP] [65], [76]
  H-NS repressor lacZp1 Sigma70 6.0 -33.0 lacZ, lacY, lacA
gtatgttgtgTGGAATTGTGAGCGGAtaacaatttc
366331 366345 [BPP] [65], [76]
  H-NS repressor lacZp1 Sigma70 24.0 -15.0 lacZ, lacY, lacA
tgagcggataACAATTTCACACAGGAaacagctatg
366313 366327 [BPP] [65], [76]
  H-NS repressor leuOp Sigma70 -96.0 -276.0 leuO
aaattaattaTTAAATAAGCACATTTaatccatttt
84085 84099 [APIORCISFBSCS], [GEA] [77]
  H-NS repressor leuOp2 nd -212.0 -276.0 leuO
aaattaattaTTAAATAAGCACATTTaatccatttt
84085 84099 [BPP], [APIORCISFBSCS], [GEA] [77]
  H-NS repressor lrpp Sigma70 nd nd lrp nd nd [BPP], [GEA], [IGI] [78]
  H-NS activator malEp Sigma70 nd nd malE, malF, malG nd nd [BPP], [GEA], [IGI] [42]
  H-NS repressor mdtJp Sigma70 -10.5 -288.5 mdtJ, mdtI
attcttaagcTATGATACAAAtcaggcgtgt
1673785 1673795 [AIBSCS], [BPP], [GEA] [79]
  H-NS repressor mdtJp Sigma70 240.5 -38.5 mdtJ, mdtI
tggtttcgctGAATTAAGCGAaaattaaaat
1673535 1673545 [AIBSCS], [BPP], [GEA] [79]
  H-NS repressor mdtJp Sigma70 288.5 10.5 mdtJ, mdtI
aggacaatgtATATTTATTGGattttattag
1673487 1673497 [AIBSCS], [BPP], [GEA] [79]
  H-NS repressor micFp Sigma70 nd nd micF nd nd [BPP], [GEA], [IGI] [80], [81]
  H-NS repressor micFp2 Sigma38 nd nd micF nd nd [BPP], [GEA], [IGI] [80], [81]
  H-NS repressor nhaAp1 Sigma70 nd nd nhaA, nhaR nd nd [BPP], [GEA], [IGI] [82]
  H-NS repressor nirBp Sigma70 nd nd nirB, nirD, nirC, cysG nd nd [BPP], [GEA], [IGI] [83], [84]
  H-NS repressor nrdAp Sigma70 -439.0 -549.0 nrdA, nrdB, yfaE
gtgcgtcataATTCAAGTTAATAACCttcagggata
2344309 2344323 [BPP], [GEA], [SM] [85]
  H-NS repressor nrdAp Sigma70 -415.0 -525.0 nrdA, nrdB, yfaE
ccttcagggaTATCAGTTATATTTAAactaaattaa
2344333 2344347 [APIORCISFBSCS], [BPP], [GEA], [SM] [85]
  H-NS repressor nrdDp Sigma70 nd nd nrdD, nrdG nd nd [BPP], [GEA], [IGI] [85]
  H-NS repressor osmCp1 Sigma70 nd nd osmC nd nd [BPP], [GEA], [IGI] [86]
  H-NS repressor osmCp2 Sigma38 nd nd osmC nd nd [BPP], [GEA], [IGI] [86]
  H-NS repressor proVp Sigma38 nd nd proV, proW, proX nd nd [BPP], [GEA], [IGI] [87], [88]
  H-NS repressor proVp1 Sigma70 nd nd proV, proW, proX nd nd [BPP], [GEA], [IGI] [87], [88]
  H-NS repressor proVp3 Sigma70 -33.0 -93.0 proV, proW, proX
atttgccatcAGGGGTTGCCTCAGATtctcagtatg
2804715 2804729 [AIBSCS], [BPP], [GEA] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 7.0 -54.0 proV, proW, proX
gggtagaaaaAAGTGACTATTTCCATtgggtaatat
2804754 2804768 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 26.0 -35.0 proV, proW, proX
tttccattggGTAATATATCGACATAgacaaataaa
2804773 2804787 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 45.0 -16.0 proV, proW, proX
cgacatagacAAATAAAGGAATCTTTctattgcatg
2804792 2804806 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 72.0 12.0 proV, proW, proX
tattgcatggCAATTAAATTAGAAATtaaaaatctt
2804819 2804833 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 84.0 24.0 proV, proW, proX
attaaattagAAATTAAAAATCTTTAtaaaatattt
2804831 2804845 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 100.0 40.0 proV, proW, proX
aaaatctttaTAAAATATTTGGCGAGcatccacagc
2804847 2804861 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 130.0 70.0 proV, proW, proX
cacagcgagcGTTCAAATATATCGAAcaaggacttt
2804877 2804891 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 156.0 96.0 proV, proW, proX
caaggactttCAAAAGAACAAATTCTggaaaaaact
2804903 2804917 [BPP] [87], [88], [89]
  H-NS repressor proVp3 Sigma70 170.0 110.0 proV, proW, proX
agaacaaattCTGGAAAAAACTGGGCtatcgcttgg
2804917 2804931 [BPP] [87], [88], [89]
  H-NS repressor rcsAp Sigma70 nd nd rcsA nd nd [BPP], [GEA], [IGI] [90], [91]
  H-NS repressor rcsDp Sigma70 nd nd rcsD, rcsB nd nd [BPP], [GEA], [IGI] [29]
  H-NS activator relAp2 Sigma70 nd nd relA, mazE, mazF nd nd [BPP], [GEA], [IGI] [92]
  H-NS repressor rrsBp Sigma32 -83.0 -375.0 rrsB, gltT, rrlB, rrfB
actggcagttTTAGGCTGATTTGGTTgaatgttgcg
4166277 4166291 [BPP] [93]
  H-NS repressor rrsBp Sigma32 -50.0 -342.0 rrsB, gltT, rrlB, rrfB
gcgcggtcagAAAATTATTTTAAATTtcctcttgtc
4166310 4166324 [BPP] [93]
  H-NS repressor rrsBp Sigma32 -26.0 -318.0 rrsB, gltT, rrlB, rrfB
tttcctcttgTCAGGCCGGAATAACTccctataatg
4166334 4166348 [BPP] [93]
  H-NS repressor rrsBp1 Sigma70 -83.0 -375.0 rrsB, gltT, rrlB, rrfB
actggcagttTTAGGCTGATTTGGTTgaatgttgcg
4166277 4166291 [BPP] [93]
  H-NS repressor rrsBp1 Sigma70 -50.0 -342.0 rrsB, gltT, rrlB, rrfB
gcgcggtcagAAAATTATTTTAAATTtcctcttgtc
4166310 4166324 [BPP] [93]
  H-NS repressor rrsBp1 Sigma70 -26.0 -318.0 rrsB, gltT, rrlB, rrfB
tttcctcttgTCAGGCCGGAATAACTccctataatg
4166334 4166348 [BPP] [93]
  H-NS repressor rrsCp Sigma32 nd nd rrsC, gltU, rrlC, rrfC nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsCp1 Sigma70 nd nd rrsC, gltU, rrlC, rrfC nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsDp Sigma32 nd nd rrsD, ileU, alaU, rrlD, rrfD, thrV, rrfF nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsDp1 Sigma70 nd nd rrsD, ileU, alaU, rrlD, rrfD, thrV, rrfF nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsGp Sigma32 nd nd rrsG, gltW, rrlG, rrfG nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsGp1 Sigma70 nd nd rrsG, gltW, rrlG, rrfG nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsHp Sigma32 nd nd rrsH, ileV, alaV, rrlH, rrfH nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor rrsHp1 Sigma70 nd nd rrsH, ileV, alaV, rrlH, rrfH nd nd [BPP], [GEA], [IGI] [94], [95]
  H-NS repressor slpp Sigma70 nd nd slp, dctR nd nd [BPP], [GEA], [IGI] [29]
  H-NS activator srlAp Sigma70 nd nd srlA, srlE, srlB, srlD, gutM, srlR, gutQ nd nd [BPP], [GEA], [IGI] [50]
  H-NS repressor ssrSp Sigma38 nd nd ssrS, fau nd nd [BPP], [GEA], [IGI] [96]
  H-NS repressor ssrSp1 Sigma70 nd nd ssrS, fau nd nd [BPP], [GEA], [IGI] [96]
  H-NS repressor ssrSp2 Sigma70 nd nd ssrS, fau nd nd [BPP], [GEA], [IGI] [96]
  H-NS repressor stpAp1 Sigma70 nd nd stpA nd nd [BPP], [GEA], [IGI] [18], [97]
  H-NS repressor yciGp Sigma38 -88.5 -145.5 yciG, yciF, yciE
aggtaattgtTAATATATCCAgaatgttcct
1316176 1316186 [APIORCISFBSCS], [BPP], [GEA] [70], [98]
  H-NS repressor yciGp Sigma38 -65.5 -122.5 yciG, yciF, yciE
atgttcctcaAAATATATTTTccctctatct
1316153 1316163 [APIORCISFBSCS], [BPP], [GEA] [70], [98]
  H-NS repressor ydeOp Sigma32 nd nd ydeO nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor ydePp Sigma70 nd nd ydeP nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor yhiMp Sigma38 nd nd yhiM nd nd [BPP], [GEA], [IGI] [29]
  H-NS repressor yjjPp nd -174.5 -350.5 yjjP
agaaatcacaTTCATTTAATTtataattaaa
4603204 4603214 [BPP], [BPP] [99]
  H-NS repressor yjjPp nd -161.5 -337.5 yjjP
atttaatttaTAATTAAATGAtatcccttcc
4603191 4603201 [BPP], [BPP] [99]
  H-NS repressor yjjQp Sigma70 -123.5 -281.5 yjjQ, bglJ
ggaagggataTCATTTAATTAtaaattaaat
4603191 4603201 [BPP] [99]
  H-NS repressor yjjQp Sigma70 -110.5 -268.5 yjjQ, bglJ
tttaattataAATTAAATGAAtgtgatttct
4603204 4603214 [BPP] [99]