RegulonDB RegulonDB 10.9:Regulon Page
   

ArcA DNA-binding transcriptional dual regulator

Synonyms: ArcA-phosphorylated, ArcA
Summary:
ArcA is a dual transcriptional regulator for Anoxic redox control [7, 11, 67]. It acts primarily as a negative transcriptional regulator under anaerobic conditions. ArcA represses operons involved in respiratory metabolism, including those that encode products such as the tricarboxylic acid cycle enzymes, enzymes of the glyoxylate shunt, and enzymes of the pathway for fatty acid degradation [7]. In addition, ArcA acts as a repressor for rpoS transcription [60]. ArcA also activates a few operons encoding proteins involved in fermentative metabolism [17, 68]. It has been identified as global repressor of carbon oxidation pathways [69]. Microarray analyses have identified a large number of genes affected by ArcA and have revealed that the Arc system and the FNR regulatory network overlap to a much greater extent than previously estimated [20, 28].
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Transcription factor      
TF conformation(s):
Name Conformation Type TF-Effector Interaction Type Apo/Holo Conformation Evidence (Confirmed, Strong, Weak) References
ArcA Non-Functional   Apo [BPP], [IPI] [1], [2], [3], [4]
ArcA-phosphorylated Functional Covalent Holo [APPH], [APPHINH], [BPP], [HIFS], [IPI] [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]
Evolutionary Family: OmpR
Sensing class: External-Two-component systems
Connectivity class: Global Regulator
Gene name: arcA
  Genome position: 4639590-4640306
  Length: 717 bp / 238 aa
Operon name: arcA
TU(s) encoding the TF:
Transcription unit        Promoter
arcA
arcAp1
arcA
arcAp2
arcA
arcAp3
arcA
arcAp4
arcA
arcAp5
arcA
arcAp6
arcA
arcAp7


Regulon       
Regulated gene(s) aceA, aceB, aceE, aceF, aceK, ackA, acnA, acnB, aldA, appA, appB, appC, appX, appY, arcZ, betA, betB, betI, betT, cadA, cadB, caiA, caiB, caiC, caiD, caiE, caiT, citC, citD, citE, citF, citG, citX, cydA, cydB, cydC, cydD, cyoA, cyoB, cyoC, cyoD, cyoE, dctA, dcuC, dpiA, dpiB, fadA, fadB, fadD, fadE, fadH, fadI, fadJ, fadL, fnr, focA, fumA, fumB, fumC, gadA, gadE, gadF, gadX, gatA, gatB,
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Multifun term(s) of regulated gene(s) MultiFun Term (List of genes associated to the multifun term)
membrane (48)
aerobic respiration (33)
anaerobic respiration (31)
electron donors (30)
carbon compounds (24)
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Regulated operon(s) aceBAK, ackA-pta, acnB, aldA, appCBXA, appY, arcZ, betIBA, betT, cadBA, caiTABCDE, citCDEFXG, cydAB, cydDC, cyoABCDE, dctA, dcuB-fumB, dcuC, dpiBA, fadBA, fadD-sroD, fadE, fadH, fadIJ, fadL, fnr, focA-pflB, fumAC, gadAXW, gadEF-mdtEF, gatYZABCD, glcDEFGBA, glpABC, glpD, gltA, grcA, hemA-prfA-prmC, hyaABCDEF, hybOABCDEFG, icd, iraM, lldPRD, mdh, moeAB, ndh, nlpD-rpoS, nuoABCEFGHIJKLMN, ompW, oppABCDF, pdhR-aceEF-lpd, ptsG, puuA-ymjE-puuP, puuDRCBE, rhaT, rmf, rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ, rsd, rutABCDEFG, sdhCDAB-sucABCD-sdhX, sodA, ssb, tpx, treBC, ubiCA, uvrA,
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First gene in the operon(s) aceB, aceE, ackA, acnA, acnB, aldA, appC, appY, arcZ, betI, betT, cadB, caiT, citC, cydA, cydD, cyoA, dctA, dcuC, dpiB, fadB, fadD, fadE, fadH, fadI, fadL, fnr, focA, fumA, fumB, fumC, gadA, gadE, gatY, glcD, glpA, glpD, gltA, grcA, hemA, hyaA, hybO, icd, iraM, lldP, lpd, mdh, moeA, ndh, nuoA, ompW, oppA, ptsG, puuA, puuD, rhaT, rmf, rpoS, rpsJ, rsd, rutA, sdhC, sodA, ssb, sucA,
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Simple and complex regulons AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR
AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR,ppGpp
AppY,ArcA,Fis,IscR,NarL,NarP,YdeO
AppY,ArcA,YdeO
ArcA
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Simple and complex regulatory phrases Regulatory phrase (List of promoters regulated by the phrase)
[ArcA,-](54)
[ArcA,+](30)


Transcription factor regulation    


Transcription factor binding sites (TFBSs) arrangements
      

  Functional conformation Function Promoter Sigma factor Central Rel-Pos Distance to first Gene Genes Sequence
LeftPos RightPos Evidence (Confirmed, Strong, Weak) References
  ArcA-phosphorylated repressor aceBp Sigma70 nd nd aceB, aceA, aceK nd nd [BPP], [GEA], [IGI] [11]
  ArcA-phosphorylated repressor aceEp Sigma70 nd nd aceE, aceF nd nd [BPP], [GEA], [IGI] [12]
  ArcA-phosphorylated repressor aceEp2 Sigma38 nd nd aceE, aceF nd nd [BPP], [GEA], [IGI] [12]
  ArcA-phosphorylated activator ackAp Sigma32 nd nd ackA nd nd [BPP], [GEA], [IGI] [12]
  ArcA-phosphorylated repressor acnAp2 Sigma70 -34.0 -84.0 acnA
aatttgggttGTTATCAAATCGTTACgcgatgtttg
1335740 1335754 [APIORCISFBSCS], [GEA] [13]
  ArcA-phosphorylated repressor acnBp Sigma70 -170.0 -266.0 acnB
gaggcggtagTTTAAATTTTGACTAAtcttgggatt
131342 131356 [APIORCISFBSCS], [GEA] [13]
  ArcA-phosphorylated repressor acnBp Sigma70 -143.0 -239.0 acnB
cttgggattcGTTGAGAAAGGTGATTatcaccatgc
131369 131383 [APIORCISFBSCS], [GEA] [13]
  ArcA-phosphorylated repressor acnBp Sigma70 -139.0 -235.0 acnB
ggattcgttgAGAAAGGTGATTATCAccatgcgaat
131373 131387 [APIORCISFBSCS], [GEA] [13]
  ArcA-phosphorylated repressor acnBp Sigma70 -119.0 -215.0 acnB
ttatcaccatGCGAATTAACGAAGTTtttacggagg
131393 131407 [EME], [AIBSPD], [APIORCISFBSCS], [CCE], [GEA] [13], [14]
  ArcA-phosphorylated repressor acnBp Sigma70 -113.0 -209.0 acnB
ccatgcgaatTAACGAAGTTTTTACGgagggaaaca
131399 131413 [APIORCISFBSCS], [GEA] [13]
  ArcA-phosphorylated repressor acnBp Sigma70 -57.0 -153.0 acnB
gattcagccaCTTTTTTATGTTGCTTttttgtaaac
131455 131469 [APIORCISFBSCS], [GEA] [13]
  ArcA-phosphorylated repressor acnBp Sigma70 -48.0 -144.0 acnB
acttttttatGTTGCTTTTTTGTAAAcagattaaca
131464 131478 [EME], [AIBSPD], [APIORCISFBSCS], [CCE], [GEA] [13], [14]
  ArcA-phosphorylated repressor aldAp Sigma70 -157.0 -199.0 aldA
aaagtcgctcGTTACGTTAAAAATTGcccgtttgtg
1488026 1488040 [APIORCISFBSCS], [BPP] [15]
  ArcA-phosphorylated repressor aldAp Sigma70 -137.0 -179.0 aldA
aaattgcccgTTTGTGAACCACTTGTttgcaaacgg
1488046 1488060 [APIORCISFBSCS], [BPP] [15]
  ArcA-phosphorylated repressor aldAp Sigma70 -5.0 -47.0 aldA
gatgattgatGTTAATTAACAATGTAttcaccgaaa
1488178 1488192 [EME], [AIBSPD], [APIORCISFBSCS], [BPP], [CCE], [SM] [14], [15]
  ArcA-phosphorylated repressor aldAp Sigma70 2.0 -41.0 aldA
tgatgttaatTAACAATGTATTCACCgaaaacaaac
1488184 1488198 [AIBSCS], [BPP] [15]
  ArcA-phosphorylated repressor aldAp Sigma70 13.0 -30.0 aldA
aacaatgtatTCACCGAAAACAAACAtataaatcac
1488195 1488209 [AIBSCS], [BPP], [SM] [15]
  ArcA-phosphorylated activator appCp Sigma70 nd nd appC, appB, appX, appA nd nd [BPP], [GEA], [IGI] [16]
  ArcA-phosphorylated activator appCp2 Sigma38 nd nd appC, appB, appX, appA nd nd [BPP], [GEA], [IGI] [16]
  ArcA-phosphorylated activator appYp2 Sigma38 -197.0 -222.0 appY
agtgagtttaTGTTAATAAAAagcatagtaa
583454 583464 [AIBSCS] [17]
  ArcA-phosphorylated repressor arcZp nd -29.0 -29.0 arcZ
aactgattcaTGTAACAAATCATTTAagttttgcta
3350541 3350555 [APIORCISFBSCS], [GEA] [18]
  ArcA-phosphorylated repressor betIp Sigma70 -74.0 -101.0 betI, betB, betA
ccactgttatTGTTACTATTTAAAATcaaattcgta
329428 329442 [BCE], [GEA]
  ArcA-phosphorylated repressor betIp Sigma70 -6.0 -33.0 betI, betB, betA
atcaataaccGCTTTAATAGATAAACaccgctgatg
329360 329374 [BCE] [17], [19]
  ArcA-phosphorylated repressor betTp Sigma70 3.0 -40.0 betT
tgtcttaattGTTACGAATTTGATTTtaaatagtaa
329416 329430 [BCE], [GEA] [17]
  ArcA-phosphorylated repressor betTp Sigma70 15.0 -28.0 betT
tacgaatttgATTTTAAATAGTAACAataacagtgg
329428 329442 [BCE], [GEA] [19]
  ArcA-phosphorylated repressor cadBp Sigma70 -179.0 -254.0 cadB, cadA
cataatttttATTACATAAATTTAACcagagaatgt
4360278 4360292 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated activator caiTp Sigma70 -101.0 -207.0 caiT, caiA, caiB, caiC, caiD, caiE
acagagcataACAAACTGATTATTAAtcaaaattaa
42131 42145 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated activator caiTp Sigma70 -91.0 -197.0 caiT, caiA, caiB, caiC, caiD, caiE
acaaactgatTATTAATCAAAATTAAcgaaaaaacg
42121 42135 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated activator caiTp Sigma70 28.0 -79.0 caiT, caiA, caiB, caiC, caiD, caiE
gcgtccacgaGGTTAATAATAATTATattaaatgtt
42003 42017 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated activator caiTp Sigma70 50.0 -57.0 caiT, caiA, caiB, caiC, caiD, caiE
ttatattaaaTGTTAACAAAAATAAAacaaacggga
41981 41995 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated repressor citCp1 nd 64.5 -32.5 citC, citD, citE, citF, citX, citG
attcgttgcaAATCGATAACAacatgcacct
651884 651894 [AIBSCS] [21]
  ArcA-phosphorylated activator cydAp1 Sigma70 -315.0 -603.0 cydA, cydB
ccctgggtgaGTTAATTATAATATAAttataagtta
770848 770862 [AIBSCS], [GEA] [20], [22], [23]
  ArcA-phosphorylated activator cydAp1 Sigma70 -304.0 -592.0 cydA, cydB
ttaattataaTATAATTATAAGTTAActaaatgtta
770859 770873 [AIBSCS], [GEA] [20], [22], [23]
  ArcA-phosphorylated activator cydAp1 Sigma70 -293.0 -581.0 cydA, cydB
ataattataaGTTAACTAAATGTTAAtattggcggg
770870 770884 [AIBSCS], [BPP], [GEA] [17], [20], [22], [23], [24], [25]
  ArcA-phosphorylated activator cydAp1 Sigma70 -84.0 -372.0 cydA, cydB
aagttaccttATTGAAACATGATTAAcataatttgt
771079 771093 [APIORCISFBSCS], [BCE], [GEA] [17], [20], [22], [23], [24], [25]
  ArcA-phosphorylated activator cydAp1 Sigma70 135.0 -154.0 cydA, cydB
ggatcaatttGAGTTTTTATTAACATgtttgcaacc
771297 771311 [AIBSCS], [GEA] [20], [22], [23]
  ArcA-phosphorylated activator cydAp2 Sigma70 -77.5 -251.5 cydA, cydB
cggtaatttaGCTATAAATTGATCACcgtcgaaaaa
771199 771213 [APIORCISFBSCS], [BPP], [GEA] [17], [22], [23]
  ArcA-phosphorylated activator cydAp3 Sigma70 nd nd cydA, cydB nd nd [BPP], [GEA], [IGI] [22], [23], [26], [27]
  ArcA-phosphorylated activator cydAp4 Sigma70 nd nd cydA, cydB nd nd [BPP], [GEA], [IGI] [22], [23], [26], [27]
  ArcA-phosphorylated activator cydDp Sigma70 -44.0 -113.0 cydD, cydC
gcaaaataatTTTACAAATCAGTAACaaaagtaaag
931068 931083 [AIBSPD], [CCE], [EME], [GEA] [14], [23]
  ArcA-phosphorylated repressor cyoAp Sigma70 -200.0 -243.0 cyoA, cyoB, cyoC, cyoD, cyoE
gataattattTGTTAAATAATTGTTTtatttcacat
451846 451860 [EME], [AIBSPD], [BCE], [CCE], [GEA] [14], [17], [24], [28]
  ArcA-phosphorylated repressor dctAp Sigma70 nd nd dctA nd nd [BPP], [GEA], [IGI] [29]
  ArcA-phosphorylated activator dcuCp nd -340.0 -455.0 dcuC
cgcttgttcaAGTTAAATATTTCCGCgcatcgatta
656416 656430 [APIORCISFBSCS], [GEA] [30]
  ArcA-phosphorylated activator dpiBp nd -95.5 -346.5 dpiB, dpiA
aggtgcatgtTGTTATCGATTtgcaacgaat
651884 651894 [AIBSCS], [AIBSCS] [21]
  ArcA-phosphorylated repressor fadBp Sigma70 -29.0 -71.0 fadB, fadA
taatcttttgTTTGCATATTTTTAACacaaaataca
4031035 4031049 [AIBSCS], [BPP], [GEA] [5], [20]
  ArcA-phosphorylated repressor fadDp Sigma70 -7.0 -68.0 fadD, sroD
tggtatgatgAGTTAATATTATGTTAacggcatgta
1889807 1889821 [EME], [AIBSCS], [AIBSPD], [BPP], [CCE] [5], [14]
  ArcA-phosphorylated repressor fadEp nd 15.0 -89.0 fadE
agctttgttgTAATTATATTGTAAACatattgctaa
243385 243399 [EME], [AIBSCS], [AIBSPD], [BPP], [CCE], [GEA] [5], [14]
  ArcA-phosphorylated repressor fadHp nd 19.0 -23.0 fadH
tccgaccacaTAACAATTATTTTACAtactggacaa
3231635 3231649 [EME], [AIBSPD], [APIORCISFBSCS], [CCE], [GEA] [5], [14], [31]
  ArcA-phosphorylated repressor fadIp Sigma70 -17.0 -59.0 fadI, fadJ
cttggctaaaTGTAAAAAAATGGTTAagactatgat
2460521 2460535 [AIBSCS], [BPP], [GEA] [5]
  ArcA-phosphorylated repressor fadLp Sigma38 -38.0 -139.0 fadL
aaaaagatagAAACATACTTGCAACAttccagctgg
2461160 2461174 [AIBSCS], [BPP]
  ArcA-phosphorylated repressor fnrp Sigma70 nd nd fnr nd nd [BPP], [GEA], [IGI] [12]
  ArcA-phosphorylated activator focAp1 Sigma70 -251.0 -278.0 focA, pflB
ttataaggttAAATATCGGTAATTTGtatttaataa
954737 954751 [EME], [AIBSPD], [APIORCISFBSCS], [CCE], [GEA] [14], [32]
  ArcA-phosphorylated activator focAp1 Sigma70 -114.0 -141.0 focA, pflB
atttatttttATTTGGATAATCAAATatttactccg
954600 954614 [EME], [AIBSPD], [APIORCISFBSCS], [BPP], [CCE], [GEA] [14], [32], [33], [34], [35], [36]
  ArcA-phosphorylated activator focAp1 Sigma70 -6.0 -33.0 focA, pflB
tataatgcttTGTTAGTATCTCGTCGccgacttaat
954492 954506 [APIORCISFBSCS], [GEA] [32]
  ArcA-phosphorylated activator focAp2 Sigma70 5.0 -33.0 focA, pflB
tataatgcttTGTTAGTATCTCGTCGccgacttaat
954492 954506 [APIORCISFBSCS], [GEA]
  ArcA-phosphorylated repressor fumAp Sigma70 nd nd fumA, fumC nd nd [BPP], [GEA], [IGI] [37]
  ArcA-phosphorylated activator fumBp Sigma70 nd nd fumB nd nd [BPP], [GEA], [IGI] [38]
  ArcA-phosphorylated repressor fumCp Sigma38 nd nd fumC nd nd [BPP], [GEA], [IGI]
  ArcA-phosphorylated activator gadAp Sigma70 nd nd gadA, gadX nd nd [BPP], [GEA], [IGI] [28]
  ArcA-phosphorylated activator gadAp2 Sigma38 nd nd gadA, gadX nd nd [BPP], [GEA], [IGI] [28]
  ArcA-phosphorylated activator gadEp1 Sigma38 nd nd gadE, gadF nd nd [BPP], [GEA], [IGI] [39]
  ArcA-phosphorylated activator gadEp3 Sigma70 nd nd gadE, gadF nd nd [BPP], [GEA], [IGI] [39]
  ArcA-phosphorylated repressor gatYp Sigma70 nd nd gatY, gatZ, gatA, gatB, gatC, gatD nd nd [BPP], [GEA], [IGI] [28]
  ArcA-phosphorylated repressor glcDp Sigma70 -111.0 -166.0 glcD, glcE, glcF, glcG, glcB, glcA
taagtgattaTGTTACATCAATTTAAcattgagtta
3128180 3128194 [AIBSPD], [BPP], [CCE], [GEA] [40]
  ArcA-phosphorylated repressor glcDp Sigma70 -104.0 -159.0 glcD, glcE, glcF, glcG, glcB, glcA
ttatgttacaTCAATTTAACATTGAGttaaccaaga
3128173 3128187 [AIBSCS], [AIBSPD], [BPP], [CCE], [GEA] [20], [40]
  ArcA-phosphorylated repressor glpABCp Sigma70 nd nd glpA, glpB, glpC nd nd [BPP], [GEA], [IGI] [41]
  ArcA-phosphorylated repressor glpDp Sigma70 nd nd glpD nd nd [BPP], [GEA], [IGI] [41]
  ArcA-phosphorylated repressor gltAp1 Sigma70 -47.0 -346.0 gltA
ttgacaatcaTTCAACAAAGTTGTTAcaaacattac
754807 754821 [EME], [AIBSPD], [APIORCISFBSCS], [BCE], [CCE], [GEA] [14], [17], [23], [28], [42], [43]
  ArcA-phosphorylated activator grcAp1 Sigma70 -99.0 -173.0 grcA
tttcacacccGCATAAGTTGATGTAAaacaataaaa
2716615 2716629 [APIORCISFBSCS], [GEA] [44]
  ArcA-phosphorylated activator grcAp1 Sigma70 -82.0 -156.0 grcA
ttgatgtaaaACAATAAAATCCATTTgcgaccatac
2716598 2716612 [APIORCISFBSCS], [GEA] [44]
  ArcA-phosphorylated activator hemAp1 Sigma70 nd nd hemA, prfA, prmC nd nd [BPP], [GEA], [IGI] [45], [46]
  ArcA-phosphorylated activator hyaAp Sigma70 -67.0 -222.0 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
aaaaataggtCCATTTTTATCGCTAAaagataaatc
1031910 1031924 [APIORCISFBSCS], [GEA] [47]
  ArcA-phosphorylated activator hyaAp Sigma70 -7.5 -162.5 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
gtgcaaaagtTTCACTACGCTTTATTAACAATActttctggcg
1031966 1031988 [APIORCISFBSCS], [BPP], [GEA] [48]
  ArcA-phosphorylated activator hyaAp2 Sigma38 -67.0 -222.0 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
aaaaataggtCCATTTTTATCGCTAAaagataaatc
1031910 1031924 [APIORCISFBSCS], [GEA] [47]
  ArcA-phosphorylated activator hyaAp2 Sigma38 -7.5 -162.5 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
gtgcaaaagtTTCACTACGCTTTATTAACAATActttctggcg
1031966 1031988 [APIORCISFBSCS], [BPP], [GEA] [48]
  ArcA-phosphorylated repressor hybOp1 Sigma70 -57.0 -159.0 hybO, hybA, hybB, hybC, hybD, hybE, hybF, hybG
tattatcttgCTTTAATTAATTACACtaatgcttct
3146413 3146427 [APIORCISFBSCS], [GEA] [47]
  ArcA-phosphorylated repressor icdAp1 Sigma70 -3.0 -118.0 icd
caatagggtaGTATTGACAAGCCAATtacaaatcat
1194998 1195013 [APIORCISFBSCS], [BPP], [GEA] [23], [28], [49], [50]
  ArcA-phosphorylated repressor icdAp1 Sigma70 16.0 -100.0 icd
aagccaattaCAAATCATTAACAAAAaattgctcta
1195016 1195031 [EME], [AIBSPD], [APIORCISFBSCS], [BPP], [CCE], [GEA] [14], [23], [28], [49], [50]
  ArcA-phosphorylated activator iraMp nd -170.5 -257.5 iraM
cataaaggctATGTTTTAATTACAGGatgttcagtc
1212253 1212267 [AIBSCS] [51]
  ArcA-phosphorylated activator iraMp nd -16.5 -103.5 iraM
atataagccaTCATTTTAATTAATTTatttttttga
1212099 1212113 [AIBSCS] [51]
  ArcA-phosphorylated repressor lldPp Sigma70 -18.0 -128.0 lldP, lldR, lldD
gttgccaataCATAACATTTAGTTAAccattcattg
3777264 3777278 [AIBSCS], [APIORCISFBSCS], [BPP], [GEA] [17], [22]
  ArcA-phosphorylated repressor lldPp Sigma70 10.0 -101.0 lldP, lldR, lldD
cattcattgtCATTATCCCTACACAAcacaattggc
3777291 3777305 [BPP], [GEA] [20], [22]
  ArcA-phosphorylated repressor lpdAp Sigma70 -27.0 -222.0 lpd
cgtttgttgtTTAAAAATTGTTAACAattttgtaaa
127683 127697 [EME], [AIBSCS], [AIBSPD], [CCE] [14]
  ArcA-phosphorylated repressor lpdAp Sigma70 -18.0 -213.0 lpd
tttaaaaattGTTAACAATTTTGTAAaataccgacg
127692 127706 [EME], [AIBSCS], [AIBSPD], [BPP], [CCE], [GEA] [14], [28], [52], [53]
  ArcA-phosphorylated repressor mdhp1 Sigma70 27.0 -19.0 mdh
acatatcttaGTTTATCAATATAATAaggagtttag
3384280 3384294 [BCE], [GEA] [17], [28], [54]
  ArcA-phosphorylated activator moeAp Sigma70 -137.0 -167.0 moeA, moeB
gtggttcgccACTTTTGCTATAAATAtcagaatttt
866524 866538 [BPP], [GEA] [55]
  ArcA-phosphorylated repressor ndhp Sigma70 -57.0 -150.0 ndh
cttttcagcaACAAAACTTGATTAACatcaattttg
1165928 1165942 [AIBSCS], [GEA] [20], [56]
  ArcA-phosphorylated repressor ndhp Sigma70 36.0 -58.0 ndh
gtaacctgttGTTAATTAAGAGCTATgttaataacc
1166020 1166034 [AIBSCS], [GEA] [20], [56]
  ArcA-phosphorylated repressor ndhp Sigma70 52.0 -42.0 ndh
taagagctatGTTAATAACCATTAATtaacaattgg
1166036 1166050 [AIBSCS], [GEA] [20], [56]
  ArcA-phosphorylated repressor ndhp Sigma70 57.0 -37.0 ndh
gctatgttaaTAACCATTAATTAACAattggttaat
1166041 1166055 [AIBSCS], [GEA] [20], [56]
  ArcA-phosphorylated repressor ndhp Sigma70 66.0 -28.0 ndh
ataaccattaATTAACAATTGGTTAAtaaatttaag
1166050 1166064 [AIBSCS], [GEA] [20], [56]
  ArcA-phosphorylated repressor ndhp Sigma70 68.0 -26.0 ndh
aaccattaatTAACAATTGGTTAATAaatttaaggg
1166052 1166066 [AIBSCS], [GEA] [20], [56]
  ArcA-phosphorylated repressor nuoAp2 Sigma70 -108.0 -198.0 nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN
atgctaatggTGTTGATATTATGTAAactaatgtga
2405263 2405277 [BCE], [GEA], [SM] [17], [23], [28]
  ArcA-phosphorylated repressor ompWp nd 1.5 -28.5 ompW
tgtaggtataTTCGTCACGTTTTTATAACcataacgacg
1313983 1314001 [AIBSCS], [BPP], [GEA] [57]
  ArcA-phosphorylated repressor oppAp Sigma28 nd nd oppA, oppB, oppC, oppD, oppF nd nd [BPP], [GEA], [IGI] [28]
  ArcA-phosphorylated repressor ptsGp1 nd -85.0 -188.0 ptsG
tgtgacatatGTTTTGTCAAAATGTGcaacttctcc
1157674 1157688 [BPP], [GEA] [58]
  ArcA-phosphorylated repressor ptsGp1 nd -48.0 -151.0 ptsG
atgatctgaaGTTGAAACGTGATAGCcgtcaaacaa
1157711 1157725 [BPP], [GEA] [58]
  ArcA-phosphorylated repressor ptsGp1 nd 2.0 -102.0 ptsG
tattttactcTGTGTAATAAATAAAGggcgcttaga
1157760 1157774 [BPP], [GEA] [58]
  ArcA-phosphorylated repressor puuAp Sigma38 -165.0 -225.0 puuA, ymjE, puuP
ccgataaccgGATTGTTCATTATATTttccatgctc
1361126 1361140 [AIBSCS], [GEA] [51]
  ArcA-phosphorylated repressor puuDp Sigma38 82.0 14.0 puuD, puuR, puuC, puuB, puuE
gagcatggaaAATATAATGAACAATCcggttatcgg
1361126 1361140 [AIBSCS], [AIBSCS], [GEA] [51]
  ArcA-phosphorylated repressor rhaTp Sigma70 -184.0 -225.0 rhaT
cgtaagcagtTGGTTCATTATAGTTAattaaatgat
4100743 4100757 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated repressor rhaTp Sigma70 -173.0 -214.0 rhaT
ggttcattatAGTTAATTAAATGATAttgaaaatga
4100732 4100746 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated repressor rhaTp Sigma70 -156.0 -197.0 rhaT
taaatgatatTGAAAATGATTATCAAtgccgtactt
4100715 4100729 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated repressor rmfp nd nd nd rmf nd nd [BPP], [GEA], [IGI] [59]
  ArcA-phosphorylated repressor rpoSp Sigma70 -64.0 -631.0 rpoS
cagagcaaggAGTTGTGATCAAGCCTgcacaaaatt
2868175 2868189 [BPP], [GEA] [60]
  ArcA-phosphorylated repressor rpoSp Sigma70 24.0 -544.0 rpoS
gtgaacagagTGCTAACAAAATGTTGccgaacaaca
2868088 2868102 [BPP], [GEA] [60]
  ArcA-phosphorylated repressor rpsJp Sigma70 nd nd rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ nd nd [BPP], [GEA], [IGI] [28]
  ArcA-phosphorylated repressor rsdp2 Sigma70 nd nd rsd nd nd [BPP], [GEA], [IGI] [59]
  ArcA-phosphorylated activator rutAp Sigma54 -97.0 -112.0 rutA, rutB, rutC, rutD, rutE, rutF, rutG
actgttttgaCCGTTTAGTCCACTTTttaccagata
1074116 1074130 [AIBSCS], [GEA] [28]
  ArcA-phosphorylated activator sdhCp Sigma70 -211.0 -430.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
tgttacataaGTTAATCTTAGGTGAAataccgactt
754740 754754 [APIORCISFBSCS], [GEA]
  ArcA-phosphorylated activator sdhCp Sigma70 -137.0 -356.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
ttgtaacaacTTTGTTGAATGATTGTcaaattagat
754814 754828 [BPP], [GEA] [61]
  ArcA-phosphorylated repressor sdhCp Sigma70 -32.0 -251.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
atgtaggttaATTGTAATGATTTTGTgaacagccta
754919 754933 [APIORCISFBSCS], [BPP], [GEA] [11], [17]
  ArcA-phosphorylated repressor sdhCp Sigma70 -27.0 -246.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
ggttaattgtAATGATTTTGTGAACAgcctatactg
754924 754938 [APIORCISFBSCS], [GEA] [11], [61]
  ArcA-phosphorylated repressor sdhCp Sigma70 257.0 38.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
acaaagacctGTTAATCTGGACCTACagaccatccg
755207 755221 [BPP], [GEA] [61]
  ArcA-phosphorylated repressor sodAp Sigma70 -38.0 -89.0 sodA
aaagtacggcATTGATAATCATTTTCaatatcattt
4100714 4100728 [BCE] [62]
  ArcA-phosphorylated repressor sodAp Sigma70 -21.0 -72.0 sodA
atcattttcaATATCATTTAATTAACtataatgaac
4100731 4100745 [AIBSCS], [BCE] [62]
  ArcA-phosphorylated repressor sodAp Sigma70 -10.0 -61.0 sodA
tatcatttaaTTAACTATAATGAACCaactgcttac
4100742 4100756 [APIORCISFBSCS], [BCE] [62]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -153.5 -186.5 ssb
ggcgatcacaAACGGTTAATTATGACacaaattgac
4273931 4273945 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -90.5 -123.5 ssb
attacccggaGTGTTGTGTAACAATGtctggccagg
4273994 4274008 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -50.5 -83.5 ssb
tttcccggaaCCGAGGTCACAACATAgtaaaagcgc
4274034 4274048 [APIORCISFBSCS], [BPP], [GEA]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -7.5 -40.5 ssb
aatggtacaaTCGCGCGTTTACACTTattcagaacg
4274077 4274091 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp2 Sigma70 -141.5 -186.5 ssb
ggcgatcacaAACGGTTAATTATGACacaaattgac
4273931 4273945 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp2 Sigma70 -78.5 -123.5 ssb
attacccggaGTGTTGTGTAACAATGtctggccagg
4273994 4274008 [APIORCISFBSCS], [BPP], [GEA]
  ArcA-phosphorylated repressor ssbp2 Sigma70 -38.5 -83.5 ssb
tttcccggaaCCGAGGTCACAACATAgtaaaagcgc
4274034 4274048 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp2 Sigma70 5.5 -40.5 ssb
aatggtacaaTCGCGCGTTTACACTTattcagaacg
4274077 4274091 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp3 Sigma70 -72.5 -186.5 ssb
ggcgatcacaAACGGTTAATTATGACacaaattgac
4273931 4273945 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp3 Sigma70 -9.5 -123.5 ssb
attacccggaGTGTTGTGTAACAATGtctggccagg
4273994 4274008 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp3 Sigma70 31.5 -83.5 ssb
tttcccggaaCCGAGGTCACAACATAgtaaaagcgc
4274034 4274048 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor ssbp3 Sigma70 74.5 -40.5 ssb
aatggtacaaTCGCGCGTTTACACTTattcagaacg
4274077 4274091 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor sucAp Sigma38 nd nd sucA, sucB, sucC, sucD nd nd [BPP], [GEA], [IGI] [64]
  ArcA-phosphorylated repressor tpxp Sigma70 -22.0 -55.0 tpx
gcgtttgctgTGTTATTGACAGTTAGcataaactag
1388859 1388873 [APIORCISFBSCS], [GEA] [65]
  ArcA-phosphorylated activator treBp Sigma70 -237.0 -267.0 treB, treC
tggcgagcgtCGGTAATACGCCGTTAatgaaattcc
4466440 4466454 [AIBSCS], [GEA] [20]
  ArcA-phosphorylated repressor ubiCp Sigma70 nd nd ubiC, ubiA nd nd [BPP], [GEA], [IGI] [66]
  ArcA-phosphorylated repressor uvrAp Sigma70 -148.5 -213.5 uvrA
cgttctgaatAAGTGTAAACGCGCGAttgtaccatt
4274077 4274091 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor uvrAp Sigma70 -105.5 -170.5 uvrA
gcgcttttacTATGTTGTGACCTCGGttccgggaaa
4274034 4274048 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor uvrAp Sigma70 -65.5 -130.5 uvrA
cctggccagaCATTGTTACACAACACtccgggtaat
4273994 4274008 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated repressor uvrAp Sigma70 -2.5 -67.5 uvrA
gtcaatttgtGTCATAATTAACCGTTtgtgatcgcc
4273931 4273945 [APIORCISFBSCS], [BPP], [GEA] [63]
  ArcA-phosphorylated activator xylRp nd nd nd xylR nd nd [BPP], [GEA], [IGI] [28]
  ArcA-phosphorylated activator ybdNp Sigma70 64.5 -53.5 ybdN
tacagtgtttACTTTATAATTAACAGacttatctca
636615 636629 [AIBSCS] [51]
  ArcA-phosphorylated repressor ydeAp nd 16.0 -58.0 ydeA
aatgcattgtATTCACATCATTAACCgttttaagat
1616963 1616977 [AIBSCS], [GEA] [20]