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Synonyms: ArgR, ArgR-L-arginine |
Summary:
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Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | ArgR | ||||||||||||||||||
Sensing class: | Sensing external and internal signals | ||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||
Gene name: | argR | ||||||||||||||||||
Genome position: | 3384703-3385173 | ||||||||||||||||||
Length: | 471 bp / 156 aa | ||||||||||||||||||
Operon name: | argR | ||||||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | argA, argB, argC, argD, argE, argF, argG, argH, argI, argR, artI, artJ, artM, artP, artQ, astA, astB, astC, astD, astE, carA, carB, gltB, gltD, gltF, hisJ, hisM, hisP, hisQ, infB, lysO, metY, nusA, pnp, rbfA, rimP, rpsO, truB | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
arginine (16)
amino acids (5)
ABC superfamily, membrane component (4)
membrane (4)
other (mechanical, nutritional, oxidative stress) (4)
Read more >
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Regulated operon(s) | argA, argCBH, argD, argE, argF, argG, argI, argR, argT-hisJQMP, artJ, artPIQM, astCADBE, carAB, gltBDF, lysO, metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp | ||||||
First gene in the operon(s) | argA, argC, argD, argE, argF, argG, argI, argR, artJ, artP, astC, carA, gltB, hisJ, lysO, metY | ||||||
Simple and complex regulons | AdiY,ArgR,CRP,FNR,Fur,GadE,HdfR,IHF,Lrp,Nac ArgR ArgR,CRP ArgR,DksA-ppGpp,ppGpp ArgR,H-NS Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence (Confirmed, Strong, Weak) | References | |
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ArgR-L-arginine | repressor | argAp | Sigma70 | 46.5 | -40.5 | argA |
ctgcgaaaaaACAGAATAAAAATACACTAatttcgaata
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2949193 | 2949211 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [4] | |
ArgR-L-arginine | repressor | argAp | Sigma70 | 67.5 | -19.5 | argA |
atacactaatTTCGAATAATCATGCAAAgaggtgtgcc
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2949214 | 2949231 | [EME], [GEA], [AIBSCS], [AIBSPD], [APIORCISFBSCS], [BPP], [CEE] | [1], [4] | |
ArgR-L-arginine | repressor | argCp | Sigma70 | -3.5 | -119.5 | argC, argB, argH |
ggtcatgataGTATCAATATTCATGCAGtatttatgaa
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4154873 | 4154890 | [GEA], [AIBSCS], [BCE], [BPP], [SM] | [1], [4] | |
ArgR-L-arginine | repressor | argCp | Sigma70 | 19.5 | -97.5 | argC, argB, argH |
atgcagtattTATGAATAAAAATACACTaacgttgagc
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4154895 | 4154912 | [EME], [GEA], [AIBSCS], [AIBSPD], [BCE], [BPP], [CEE], [SM] | [1], [4] | |
ArgR-L-arginine | repressor | argDp | Sigma70 | -19.5 | -60.5 | argD |
attgccatttAGTGATTTTTTATGCATAttttgtggtt
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3490232 | 3490249 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [4] | |
ArgR-L-arginine | repressor | argDp | Sigma70 | 2.5 | -39.5 | argD |
atgcatatttTGTGGTTATAATTTCACAtttgtttatg
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3490211 | 3490228 | [EME], [AIBSCS], [AIBSPD], [BPP], [CEE] | [1], [4] | |
ArgR-L-arginine | repressor | argEp1 | Sigma70 | -6.5 | -56.5 | argE |
gctcaacgttAGTGTATTTTTATTCATAaatactgcat
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4154895 | 4154912 | [EME], [GEA], [AIBSCS], [AIBSPD], [BCE], [BPP], [CEE], [SM] | [1], [4] | |
ArgR-L-arginine | repressor | argEp1 | Sigma70 | 16.5 | -34.5 | argE |
ttcataaataCTGCATGAATATTGATACtatcatgacc
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4154873 | 4154890 | [GEA], [AIBSCS], [BCE], [BPP], [SM] | [1], [4] | |
ArgR-L-arginine | repressor | argFp | Sigma70 | -22.5 | -57.5 | argF |
tggggttgcaAATGAATAATTACACATAtaaagtgaat
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290354 | 290371 | [GEA], [AIBSCS], [BCE], [BPP] | [1], [4], [5] | |
ArgR-L-arginine | repressor | argFp | Sigma70 | -1.5 | -36.5 | argF |
acacatataaAGTGAATTTTAATTCAATaagtggcgtt
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290333 | 290350 | [EME], [GEA], [AIBSCS], [AIBSPD], [BPP], [CEE], [SM] | [1], [4], [6] | |
ArgR-L-arginine | repressor | argGp | Sigma70 | -125.5 | -200.5 | argG |
ttgctaatcaTGTGAATGAATATCCAGTtcactttcat
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3318428 | 3318445 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [4], [7] | |
ArgR-L-arginine | repressor | argGp | Sigma70 | -6.5 | -81.5 | argG |
ataaaagatgATTAAATGAAAACTCATTtattttgcat
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3318547 | 3318564 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [4], [7] | |
ArgR-L-arginine | repressor | argGp | Sigma70 | 15.5 | -60.5 | argG |
actcatttatTTTGCATAAAAATTCAGTgagagcggaa
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3318568 | 3318585 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [4], [7] | |
ArgR-L-arginine | repressor | argIp | Sigma70 | -22.5 | -55.5 | argI |
tagacttgcaAATGAATAATCATCCATAtaaattgaat
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4478358 | 4478375 | [GEA], [AIBSCS], [BCE], [BPP] | [1], [4] | |
ArgR-L-arginine | repressor | argIp | Sigma70 | -1.5 | -34.5 | argI |
atccatataaATTGAATTTTAATTCATTgaggcgttag
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4478337 | 4478354 | [EME], [GEA], [AIBSCS], [AIBSPD], [BCE], [BPP], [CEE] | [1], [4] | |
ArgR-L-arginine | repressor | argRp1 | Sigma70 | -27.5 | -53.5 | argR |
gggctgactgTTTGCATAAAAATTCATCtgtatgcaca
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3384641 | 3384658 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [4], [5] | |
ArgR-L-arginine | repressor | argRp1 | Sigma70 | -7.5 | -33.5 | argR |
aattcatctgTATGCACAATAATGTTGTatcaaccacc
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3384661 | 3384678 | [EME], [GEA], [AIBSCS], [AIBSPD], [APIORCISFBSCS], [BPP], [CEE] | [1], [4], [5] | |
ArgR-L-arginine | repressor | artJp | Sigma70 | -48.5 | -99.5 | artJ |
ttttatttcaTTTAAATTATTTAATCATGtttattgcat
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900666 | 900684 | [EME], [GEA], [AIBSPD], [BPP], [CEE], [SM] | [1], [8] | |
ArgR-L-arginine | repressor | artJp | Sigma70 | -27.5 | -78.5 | artJ |
taatcatgttTATTGCATATAAATTCACTtgatggcatt
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900645 | 900663 | [GEA], [AIBSCS], [BPP], [SM] | [1], [8] | |
ArgR | repressor | artPp | Sigma70 | -50.5 | -85.5 | artP, artI, artQ, artM |
tgcgctttgcTTTTAACTTTTAAAGCAGAaatattgcat
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903811 | 903829 | [EME], [GEA], [AIBSPD], [BPP], [CEE], [SM] | [1], [8] | |
ArgR | repressor | artPp | Sigma70 | -29.5 | -64.5 | artP, artI, artQ, artM |
aaagcagaaaTATTGCATAATTATTCTGTcaaaggtact
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903790 | 903808 | [GEA], [AIBSCS], [BPP], [SM] | [1], [8] | |
ArgR-L-arginine | activator | astCp2 | Sigma54 | -121.5 | -183.5 | astC, astA, astD, astB, astE |
attcacccacATCGCAAACGTATTCACTttatatgcac
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1832157 | 1832174 | [EME], [GEA], [AIBSCS], [AIBSPD], [BPP], [CEE] | [1], [9] | |
ArgR-L-arginine | activator | astCp2 | Sigma54 | -99.5 | -161.5 | astC, astA, astD, astB, astE |
ttcactttatATGCACTTTAAATGCATAtggtttggtt
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1832135 | 1832152 | [GEA], [AIBSCS], [BPP] | [9] | |
ArgR-L-arginine | activator | astCp2 | Sigma54 | -78.5 | -140.5 | astC, astA, astD, astB, astE |
atgcatatggTTTGGTTATAACTCCTTGatttccagtt
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1832114 | 1832131 | [GEA], [AIBSCS], [BPP] | [9] | |
ArgR-L-arginine | activator | astCp2 | Sigma54 | -47.5 | -109.5 | astC, astA, astD, astB, astE |
tccagttagcCTCCGCCGTTTATGCACTtttatcactg
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1832083 | 1832100 | [GEA], [AIBSCS], [BPP] | [9] | |
ArgR-L-arginine | repressor | carAp2 | Sigma70 | -8.5 | -40.5 | carA, carB |
acgtcatcatTGTGAATTAATATGCAAAtaaagtgagt
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29602 | 29619 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [1], [4], [10] | |
ArgR-L-arginine | repressor | carAp2 | Sigma70 | 13.5 | -19.5 | carA, carB |
atgcaaataaAGTGAGTGAATATTCTCTggagggtgtt
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29623 | 29640 | [EME], [GEA], [AIBSCS], [AIBSPD], [APIORCISFBSCS], [BPP], [CEE], [SM] | [1], [4], [10] | |
ArgR-L-arginine | repressor | gltBp | Sigma70 | -352.0 | -568.0 | gltB, gltD, gltF |
gcttttatcaACTGCATAATCAATCAAAattaccgaaa
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3354148 | 3354165 | [GEA], [APIORCISFBSCS], [BPP] | [11], [12] | |
ArgR-L-arginine | repressor | gltBp | Sigma70 | -331.5 | -547.5 | gltB, gltD, gltF |
aatcaaaattACCGAAATTTCATGCATAatcacataaa
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3354169 | 3354186 | [GEA], [APIORCISFBSCS], [BPP] | [11], [12] | |
ArgR-L-arginine | repressor | gltBp2 | Sigma38 | -352.0 | -568.0 | gltB, gltD, gltF |
gcttttatcaACTGCATAATCAATCAAAattaccgaaa
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3354148 | 3354165 | [GEA], [APIORCISFBSCS], [BPP] | [11], [12] | |
ArgR-L-arginine | repressor | gltBp2 | Sigma38 | -331.5 | -547.5 | gltB, gltD, gltF |
aatcaaaattACCGAAATTTCATGCATAatcacataaa
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3354169 | 3354186 | [GEA], [APIORCISFBSCS], [BPP] | [11], [12] | |
ArgR-L-arginine | repressor | hisJp | Sigma70 | -83.5 | -132.5 | hisJ, hisQ, hisM, hisP |
tggtgcattgAAATGCATACTTAAGCATTtttaatgaaa
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2426912 | 2426930 | [EME], [GEA], [AIBSPD], [BPP], [CEE], [SM] | [1], [8] | |
ArgR-L-arginine | repressor | hisJp | Sigma70 | -62.5 | -111.5 | hisJ, hisQ, hisM, hisP |
taagcattttTAATGAAAAATAATACGTCtaacggggcg
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2426891 | 2426909 | [GEA], [AIBSCS], [BPP], [SM] | [1], [8] | |
ArgR-L-arginine | repressor | lysOp | Sigma70 | -55.5 | -93.5 | lysO |
tactgctcctTATGCATAACATTTCCTTttaattgcaa
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914942 | 914959 | [EME], [GEA], [AIBSPD], [BPP], [CEE], [SM] | [1], [13] | |
ArgR-L-arginine | repressor | lysOp | Sigma70 | -34.5 | -72.5 | lysO |
tttccttttaATTGCAACTTTACTCGTCcttccgcttt
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914921 | 914938 | [GEA], [BPP], [SM] | [13] | |
ArgR-L-arginine | repressor | metYp2 | Sigma70 | -201.5 | -287.5 | metY, rimP, nusA, infB, rbfA, truB, rpsO, pnp |
ttccgctctcACTGAATTTTTATGCAAAataaatgagt
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3318568 | 3318585 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [7] | |
ArgR-L-arginine | repressor | metYp2 | Sigma70 | -180.5 | -266.5 | metY, rimP, nusA, infB, rbfA, truB, rpsO, pnp |
atgcaaaataAATGAGTTTTCATTTAATcatcttttat
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3318547 | 3318564 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [7] | |
ArgR-L-arginine | repressor | metYp2 | Sigma70 | -61.5 | -147.5 | metY, rimP, nusA, infB, rbfA, truB, rpsO, pnp |
atgaaagtgaACTGGATATTCATTCACAtgattagcaa
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3318428 | 3318445 | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [1], [7] |
Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence (Confirmed, Strong, Weak) | References | |
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ArgR-L-arginine | activator | gltP | Gene | nd | 4294256 | 4294295 | 4294275.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | ykgA | Gene | nd | 316883 | 316922 | 316902.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | gltP | Gene | nd | 4294288 | 4294327 | 4294307.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | yaaU | Gene | nd | 45774 | 45813 | 45793.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | puuB | Gene | nd | 1364244 | 1364283 | 1364263.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | eutS | Gene | nd | 2575928 | 2575967 | 2575947.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | yraQ | Gene | nd | 3298201 | 3298240 | 3298220.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | gltP | Gene | nd | 4294147 | 4294186 | 4294166.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | aroP | Gene | nd | 121792 | 121831 | 121811.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | activator | yffB | Gene | nd | 2591207 | 2591246 | 2591226.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | yhcC | Transcription-Unit | -117.0 |
tttatgtgatTATGCATGAAATTTCGGTAATTTTGATTGATTATGCAGTtgataaaagc
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3354148 | 3354187 | 3354167.0 | nd | [EME], [GEA], [AIBSCS], [AIBSPD], [BPP], [CEE] | [1], [11], [14] | |
ArgR-L-arginine | repressor | waaA | Gene | nd | 3808394 | 3808433 | 3808413.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | hchA | Gene | nd | 2035484 | 2035523 | 2035503.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | stpA | Gene | nd | 2798743 | 2798782 | 2798762.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | cvpA | Gene | nd | 2430869 | 2430908 | 2430888.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | dacC | Gene | nd | 880767 | 880806 | 880786.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | gltB | Gene | nd | 3354541 | 3354580 | 3354560.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | mcaS | Gene | nd | 1405819 | 1405858 | 1405838.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | pyrL | Gene | nd | 4472623 | 4472662 | 4472642.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | aroK | Gene | nd | 3519202 | 3519241 | 3519221.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | hisL | Gene | nd | 2089964 | 2090003 | 2089983.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | lrp | Gene | nd | 932353 | 932392 | 932372.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | ftsZ | Gene | nd | 105232 | 105271 | 105251.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | hchA | Gene | nd | 2035538 | 2035577 | 2035557.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | dps | Gene | nd | 849151 | 849190 | 849170.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | mukE | Gene | nd | 975739 | 975778 | 975758.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | potF | Gene | nd | 893697 | 893736 | 893716.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | pfkB | Gene | nd | 1806222 | 1806261 | 1806241.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | ydgI | Gene | nd | 1679490 | 1679529 | 1679509.0 | nd | [EME], [AIBSPD], [CEE] | [1] | ||
ArgR-L-arginine | repressor | yfcC | Gene | nd | 2416994 | 2417033 | 2417013.0 | nd | [EME], [AIBSPD], [CEE] | [1] |
Alignment and PSSM for ArgR TFBSs | ![]() |
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Aligned TFBS of ArgR |
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Sequence | |
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TATTTTGCATAAAAATTCAGT | |
TTTATTGCATATAAATTCACT | |
AATATTGCATAATTATTCTGT | |
CTGTTTGCATAAAAATTCATC | |
CTTATTGAATTAAAATTCACT | |
TTATATGGATGATTATTCATT | |
TTATTTGCATATTAATTCACA | |
AAATATGCATAAAAAATCACT | |
ATTTATGAATAAAAATACACT | |
TAAATTGAATTTTAATTCATT | |
TCATGTGAATGAATATCCAGT | |
AATTTTGATTGATTATGCAGT | |
TTATATGTGTAATTATTCATT | |
GATTATGCATGAAATTTCGGT | |
AAAAATGCTTAAGTATGCATT | |
TAAAGTGAGTGAATATTCTCT | |
AATACTGCATGAATATTGATA | |
CTCTTTGCATGATTATTCGAA | |
ATTAGTGTATTTTTATTCTGT | |
TTTTGTGGTTATAATTTCACA | |
CCTTATGCATAACATTTCCTT | |
ATGATTAAATGAAAACTCATT | |
TTTAATGAAAAATAATACGTC | |
CTGTATGCACAATAATGTTGT | |
ATTTCTGCTTTAAAAGTTAAA | |
CCATATGCATTTAAAGTGCAT | |
TAAAGTGAATACGTTTGCGAT | |
TTAATTGCAACTTTACTCGTC | |
AAACATGATTAAATAATTTAA | |
TGGTTTGGTTATAACTCCTTG | |
AAAAGTGCATAAACGGCGGAG |
Position weight matrix (PWM). ArgR matrix-quality result |
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A 11 12 13 13 11 0 1 10 23 2 17 22 17 17 25 2 2 0 17 6 6 C 6 3 1 1 2 0 0 16 0 1 1 1 1 1 1 2 3 25 2 7 3 G 1 1 4 0 6 0 30 3 2 0 8 0 2 0 1 3 4 3 6 7 2 T 13 15 13 17 12 31 0 2 6 28 5 8 11 13 4 24 22 3 6 11 20 |
Consensus |
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; consensus.strict ttattTGcaTaaaaattCatt ; consensus.strict.rc AATGAATTTTTATGCAAATAA ; consensus.IUPAC wwwwwTGmaTrawwattCabt ; consensus.IUPAC.rc AVTGAATWWTYATKCAWWWWW ; consensus.regexp [at][at][at][at][at]TG[ac]aT[ag]a[at][at]attCa[cgt]t ; consensus.regexp.rc A[ACG]TGAAT[AT][AT]T[CT]AT[GT]CA[AT][AT][AT][AT][AT] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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