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Synonyms: TorR-TorI, TorR, TorR-phosphorylated |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | OmpR | ||||||||||||||||||||||||||||
TFBs length: | 10 | ||||||||||||||||||||||||||||
Sensing class: | External-Two-component systems | ||||||||||||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||||||||||||
Gene name: | torR | ||||||||||||||||||||||||||||
Genome position: | 1057262-1057954 | ||||||||||||||||||||||||||||
Length: | 693 bp / 230 aa | ||||||||||||||||||||||||||||
Operon name: | torR | ||||||||||||||||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | gadA, gadX, hdeA, hdeB, tnaA, tnaB, tnaC, torA, torC, torD, torR, yhiD | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
pH (3)
anaerobic respiration (3)
Transcription related (2)
activator (2)
amino acids (2)
Read more >
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Regulated operon(s) | gadAXW, hdeAB-yhiD, tnaCAB, torCAD, torR | ||||||
First gene in the operon(s) | gadA, hdeA, tnaC, torC, torR | ||||||
Simple and complex regulons | AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR,ppGpp CRP,TorR FliZ,GadE,GadW,GadX,H-NS,Lrp,MarA,PhoP,RcsB,TorR NarL,TorR Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Alignment and PSSM for TorR TFBSs | ![]() |
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Aligned TFBS of TorR |
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Sequence | |
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AAATATGAACAGC | |
GAATATGAACAGA | |
AGATATGAACAGA | |
AAATGTGAATCGA | |
TATTAAAAACAGA | |
AAACGTGAATCGA | |
TGACATATACAGA | |
TATCAAAATCAGA | |
CAGGATGAACGGC | |
TAATCTTTAAAAA |
Position weight matrix (PWM). TorR matrix-quality result |
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A 4 8 7 0 7 2 3 8 9 1 7 1 8 C 1 0 0 3 1 0 0 0 0 7 2 0 2 G 1 2 1 1 2 0 6 0 0 0 1 9 0 T 4 0 2 6 0 8 1 2 1 2 0 0 0 |
Consensus |
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; consensus.strict aaatatGaACaGa ; consensus.strict.rc TCTGTTCATATTT ; consensus.IUPAC waayatRaACaGa ; consensus.IUPAC.rc TCTGTTYATRTTW ; consensus.regexp [at]aa[ct]at[AG]aACaGa ; consensus.regexp.rc TCTGTT[CT]AT[AG]TT[AT] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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