RegulonDB RegulonDB 10.8: Regulon Form
   
   


PspF regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
PspF      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator PspF, YcjB
Gene name(s): pspF
Functional conformation(s): PspF
Coregulator(s): IHF, PspF
Summary: TF Summary ...[more]

REGULATION EXERTED BY PspF Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
PspF repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
PspF repressor pspFp1 pspF 1367911 1367927 27.0 acactaacaaGTGGCGAATTTCATCATggcagaatac [BCE]
[BPP]
[CV(CHIP-SV/GEA/ROMA)]
[CV(GEA/ROMA)]
[GEA]
[1]
[2]
[3]
PspF repressor pspFp1 pspF 1367931 1367947 7.0 ccaggatgagTTAGCGAATTACACTAAcaagtggcga [BCE]
[BPP]
[CV(CHIP-SV/GEA/ROMA)]
[CV(GEA/ROMA)]
[GEA]
[1]
[2]
[3]

Evidence: [BCE] Binding of cellular extracts
[BPP] Binding of purified proteins
[CV(CHIP-SV/GEA/ROMA)] cross validation(CHIP-SV/GEA/ROMA)
[CV(GEA/ROMA)] cross validation(GEA/ROMA)
[GEA] Gene expression analysis
Reference(s): [1] Jovanovic G., et al., 1997
[2] Jovanovic G., et al., 1997
[3] Jovanovic G., et al., 1999



Reference(s)    

 [1] Jovanovic G., Dworkin J., Model P., 1997, Autogenous control of PspF, a constitutively active enhancer-binding protein of Escherichia coli., J Bacteriol 179(16):5232-7

 [2] Jovanovic G., Model P., 1997, PspF and IHF bind co-operatively in the psp promoter-regulatory region of Escherichia coli., Mol Microbiol 25(3):473-81

 [3] Jovanovic G., Rakonjac J., Model P., 1999, In vivo and in vitro activities of the Escherichia coli sigma54 transcription activator, PspF, and its DNA-binding mutant, PspFDeltaHTH., J Mol Biol 285(2):469-83


RegulonDB