RegulonDB RegulonDB 10.8: Regulon Form
   
   


YjjQ regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
YjjQ Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor YjjQ
Gene name(s): yjjQ
Functional conformation(s): YjjQ
Coregulator(s): AcrR, CRP, CpxR, EnvY, FliZ, Fur, H-NS, HdfR, IHF, LrhA, Lrp, MatA, OmpR, QseB, RcsAB, YjjQ
Summary: TF Summary ...[more]

REGULATION EXERTED BY YjjQ Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
YjjQ repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
YjjQ repressor ybhLp ybhL 819852 819866 2.0 gcagtatcctTAAGATATTCCTTATatcttcagga [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]
YjjQ repressor yfiRp yfiR , dgcN , yfiB 2741752 2741766 -65.0 aaattaaacaTAAGATTTTACTCATtgtgttttat [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]
YjjQ repressor ymiAp ymiA , yciX 1335077 1335091 -6.0 aaagtttcttTAGGATTTGTCTCATcgtatgatta [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]
YjjQ repressor gfcAp gfcA 1050711 1050725 -16.0 tgtattttgcTAAGATTTATCTTATgctcacaagt [AIBSCS]
[CV(CHIP-SV/GEA/ROMA)]
[CV(CHIP-SV/SM)]
[CV(GEA/ROMA)]
[CV(GEA/ROMA/SM)]
[GEA]
[SM]
[1]
YjjQ repressor gfcAp gfcA 1050744 1050758 -49.0 atagctttcgTAACAATTTCCTTATctttaatttg [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]

Evidence: [AIBSCS] Automated inference based on similarity to consensus sequences
[CV(GEA/ROMA)] cross validation(GEA/ROMA)
[GEA] Gene expression analysis
[CV(CHIP-SV/GEA/ROMA)] cross validation(CHIP-SV/GEA/ROMA)
[CV(CHIP-SV/SM)] cross validation(CHIP-SV/SM)
[CV(GEA/ROMA/SM)] cross validation(GEA/ROMA/SM)
[SM] Site mutation
Reference(s): [1] Wiebe H., et al., 2015



Reference(s)    

 [1] Wiebe H., Gurlebeck D., Gross J., Dreck K., Pannen D., Ewers C., Wieler LH., Schnetz K., 2015, YjjQ Represses Transcription of flhDC and Additional Loci in Escherichia coli., J Bacteriol 197(16):2713-20


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