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CysB,PhoP regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
CysB Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class Sensing external and internal signals
Synonym(s): DNA-binding transcriptional dual regulator CysB, positive transcriptional regulator for cysteine regulon
Gene name(s): cysB
Functional conformation(s): CysB , CysB-O-acetyl-L-serine , CysB-N-acetyl-L-serine , CysB-Sulphide , CysB-Thiosulfate
Coregulator(s): ArcA, Cbl, CpxR, CysB, FNR, H-NS, IHF, NtrC, PhoP
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
PhoP Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class External-Two-component systems
Synonym(s): DNA-binding transcriptional dual regulator PhoP, PhoP response regulator
Gene name(s): phoP
Functional conformation(s): PhoP-Phosphorylated , PhoP
Coregulator(s): AcrR, ArcA, ArgR, BasR, CRP, CysB, EnvR, EvgA, FNR, FadR, FliZ, GadE, GadW, GadX, H-NS, HypT, Lrp, MalT, MarA, MetJ, MprA, NagC, NarL, NarP, NtrC, OmpR, PdhR, PhoP, PurR, RbsR, RcsB, Rob, RutR, SdiA, SlyA, SoxR, SoxS, TorR, UvrY, YdeO, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY CysB,PhoP Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
CysB repressor PhoP activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
PhoP-Phosphorylated activator cysBp cysB 1333734 1333757 -43.0 acctatacacTAAGGCTATAAATGATATAGTGGTtatagttagc   [1]
CysB repressor cysBp cysB 1333751 1333797 -14.0 ataaatgataTAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCAcccgccaggt   [2]

Reference(s): [1] Kaleta C., et al., 2010
[2] Jagura-Burdzy G., et al., 1981



Reference(s)    

 [1] Kaleta C., Gohler A., Schuster S., Jahreis K., Guthke R., Nikolajewa S., 2010, Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis., BMC Syst Biol 4:116

 [2] Jagura-Burdzy G., Hulanicka D., 1981, Use of gene fusions to study expression of cysB, the regulatory gene of the cysteine regulon., J Bacteriol 147(3):744-51


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