RegulonDB RegulonDB 10.9: Regulon Form
   
   


AtoC,IHF regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
AtoC      Tractordb tool
Connectivity class Local Regulator
Sensing Class External-Two-component systems
Synonym(s): AtoC response regulator, AtoC transcriptional activator; Az protein inhibitor of ODC, DNA-binding transcriptional activator/ornithine decarboxylase inhibitor AtoC
Gene name(s): atoC
Functional conformation(s): AtoC-phosphorylated , AtoC
Coregulator(s): AtoC, IHF
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
IHF Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Synonym(s): DNA-binding transcriptional dual regulator IHF
Gene name(s): ihfB, ihfA
Functional conformation(s): IHF
Coregulator(s): AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BolA, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YiaJ, YjjQ, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY AtoC,IHF Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
AtoC activator IHF activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
AtoC-phosphorylated activator atoDp atoD , atoA , atoE , atoB 2323264 2323283 -138.5 ccaaaacttgCTATGCAGAAATTTGCACAGTgcgcaatttt   [1]
[2]
[3]
[4]
AtoC-phosphorylated activator atoDp atoD , atoA , atoE , atoB 2323283 2323302 -119.5 aatttgcacaGTGCGCAATTTTCTGCATAGCcgctcattct   [1]
[2]
[3]
[4]
IHF activator atoDp atoD , atoA , atoE , atoB 2323374 2323386 -32.0 actaaatccaATAATCTCATTCTGgcactcccct   [4]
IHF activator atoDp atoD , atoA , atoE , atoB 2323349 2323361 -57.0 cccttcatatTCAATTAGTTAAATaactaaatcc   [4]

Reference(s): [1] Jenkins LS., et al., 1987
[2] Jenkins LS., et al., 1987
[3] Lioliou EE., et al., 2005
[4] Matta MK., et al., 2007



Reference(s)    

 [1] Jenkins LS., Nunn WD., 1987, Regulation of the ato operon by the atoC gene in Escherichia coli., J Bacteriol 169(5):2096-102

 [2] Jenkins LS., Nunn WD., 1987, Genetic and molecular characterization of the genes involved in short-chain fatty acid degradation in Escherichia coli: the ato system., J Bacteriol 169(1):42-52

 [3] Lioliou EE., Mimitou EP., Grigoroudis AI., Panagiotidis CH., Panagiotidis CA., Kyriakidis DA., 2005, Phosphorylation activity of the response regulator of the two-component signal transduction system AtoS-AtoC in E. coli., Biochim Biophys Acta 1725(3):257-68

 [4] Matta MK., Lioliou EE., Panagiotidis CH., Kyriakidis DA., Panagiotidis CA., 2007, Interactions of the antizyme AtoC with regulatory elements of the Escherichia coli atoDAEB operon., J Bacteriol 189(17):6324-32


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