RegulonDB RegulonDB 10.9: Regulon Form
   
   


NsrR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
NsrR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor NsrR, YjeB
Gene name(s): nsrR
Functional conformation(s): NsrR-nitric oxide , NsrR , NsrR-[2Fe-2S]2+ oxidized , NsrR-[2Fe-2S]reduced
Coregulator(s): ArcA, CRP, CpxR, CsgD, CytR, DksA, DksA-ppGpp, DsdC, FNR, FeaR, FhlA, Fis, FlhDC, Fur, GadE, H-NS, IHF, IscR, Lrp, MatA, MetR, ModE, Nac, NarL, NarP, NorR, NsrR, OxyR, PdhR, PhoB, QseB, SutR, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY NsrR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
NsrR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
NsrR repressor tehAp tehA , tehB 1500526 1500544 -1.0 aattccataaAATGCATTTCAAATATACTTtataaattaa   [1]
[2]
NsrR repressor tsgAp tsgA 3492450 3492461 -64.0 atcacctcttAAAATGCAATTTagcaaccgat   [2]
NsrR repressor mhpTp mhpT 374897 374908 -484.0 actgccgagaACGTGCATTTTGtatgcccatc   [2]
NsrR repressor dkgBp dkgB 229082 229093 -11.0 cgcaaaaatcCTCTGCATTTTAcgctcttttt   [2]
NsrR repressor mepHp mepH 1734291 1734302 -61.0 tagctttcacTGCTGCATTTTTttgcgctcgc   [2]
NsrR repressor dkgBp dkgB 229156 229167 64.0 tagcattaaaAGAGGCATATTAtggctatccc   [2]
NsrR repressor yeaEp yeaE 1865715 1865726 5.0 acaaattctgATAATGCATCTTtccagggcat   [2]
NsrR repressor pgpCp tadA , pgpC 2698503 2698514 131.0 gttttttgacTTAGATGGAACAttgcatcagc   [2]
NsrR repressor ydbDp ydbD 1475099 1475110 39.0 acaaaagggaAAGATGCATTTCcctttttttc   [2]
NsrR repressor rfep rfe , wzzE , wecB , wecC , rffG , rffH , rffC , wecE , wzxE , wecF , wzyE , rffM 3967794 3967805 -1.0 catgttatgcAATTTGCATATCaaatggttaa   [2]
NsrR repressor bdcAp bdcA 4474077 4474088 -18.0 aaacagttttGTAATGCATGTTacataataaa   [2]
NsrR repressor fliAp2 tcyJ , fliZ , fliA 2001808 2001819 -5.0 taatcatgccGATAACTCATATaacgcagggc   [2]
NsrR repressor tehAp tehA , tehB 1500558 1500569 28.0 taaattaaacAAAATGAGTAAGaagatgcaga   [2]
NsrR repressor fliAp2 tcyJ , fliZ , fliA 2002021 2002032 -218.0 cctacaagttGAATTGCAATTTattgaatttg [APIORCISFBSCS]
[GEA]
[2]
NsrR repressor grxD grxD 1734170 1734181 -13.0 aaagcgtgatGAAAATGTTATTttccgatgcc   [2]

Evidence: [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.
[GEA] Gene expression analysis
Reference(s): [1] Bodenmiller DM., et al., 2006
[2] Partridge JD., et al., 2009



Reference(s)    

 [1] Bodenmiller DM., Spiro S., 2006, The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator., J Bacteriol 188(3):874-81

 [2] Partridge JD., Bodenmiller DM., Humphrys MS., Spiro S., 2009, NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility., Mol Microbiol 73(4):680-94


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